Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SP10 | Genbank acc : NC_019487

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 236

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	141	lcl\|NC_019487.1_cdsid_YP_007003398.1	HHsearch (proba=100.00%)
Portal	138	lcl\|NC_019487.1_cdsid_YP_007003395.1	HHsearch (proba=100.00%)
TermL	119	lcl\|NC_019487.1_cdsid_YP_007003376.1	Blast (e-value=1e-118)
MTP	149	lcl\|NC_019487.1_cdsid_YP_007003406.1	Blast (e-value=4e-44)
Sheath	148	lcl\|NC_019487.1_cdsid_YP_007003405.1	HHsearch (proba=100.00%)
Ad1	143	lcl\|NC_019487.1_cdsid_YP_007003400.1	HHsearch (proba=97.95%)
Hc1	47	lcl\|NC_019487.1_cdsid_YP_007003304.1	HHsearch (proba=86.01%)
Ne1	145	lcl\|NC_019487.1_cdsid_YP_007003402.1	HHsearch (proba=90.93%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	96	2
Ne1<->Hc1	98	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:97255 protein:vir:94933 protein:vir:78830	M6 Xp15 80alpha	14 % 14 % 9 %
Portal	protein:vir:102118 protein:vir:101289 protein:vir:100650	phiSM101 phiNM3 77	18 % 17 % 17 %
TermL	protein:vir:10320 protein:vir:6239 protein:vir:1636	VHML phi-BT1 r1t	16 % 16 % 15 %
MTP	protein:vir:102360 protein:vir:102914 protein:vir:79038	phi CD119 EJ-1 phiC2	11 % 16 % 16 %
Sheath	protein:vir:98553 protein:vir:10336 protein:vir:105470	PSP3 VHML KC5a	17 % 17 % 16 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:8104	phi644-2 phiE125 Che9c	15 % 15 % 14 %
Hc1	protein:vir:95145 protein:vir:97237 protein:vir:104346	PA73 M6 RTP	24 % 29 % 28 %
Ne1	protein:vir:5978 protein:vir:107099 protein:vir:94108	SPP1 CNPH82 96	13 % 13 % 13 %