Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : KC5a | Genbank acc : NC_007924 | Aclame index mge :1502

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	39	lcl\|Aclame:protein:vir:105464\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	36	lcl\|Aclame:protein:vir:105461\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	35	lcl\|Aclame:protein:vir:105460\|NCBI_annot:putative	Blast (e-value=0)
MTP	46	lcl\|Aclame:protein:vir:105471\|NCBI_annot:putative	Blast (e-value=2e-89)
Sheath	45	lcl\|Aclame:protein:vir:105470\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad1	40	lcl\|Aclame:protein:vir:105465\|NCBI_annot:hypothetical	HHsearch (proba=99.61%)
Hc1	41	lcl\|Aclame:protein:vir:105466\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	42	lcl\|Aclame:protein:vir:105467\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	43	lcl\|Aclame:protein:vir:105468\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105464 protein:vir:79008 protein:vir:99523	KC5a phiC2 Lj928	100 % 41 % 26 %
Portal	protein:vir:105461 protein:vir:102950 protein:vir:102330	KC5a EJ-1 phi CD119	100 % 41 % 35 %
TermL	protein:vir:105460 protein:vir:105897 protein:vir:94084	KC5a phiETA3 96	100 % 44 % 44 %
MTP	protein:vir:105471 protein:vir:79038 protein:vir:102914	KC5a phiC2 EJ-1	100 % 35 % 32 %
Sheath	protein:vir:105470 protein:vir:102957 protein:vir:78986	KC5a EJ-1 phiC2	100 % 38 % 30 %
Ad1	protein:vir:102961 protein:vir:79050	EJ-1 phiC2	19 % 22 %
Hc1	protein:vir:105466 protein:vir:78985 protein:vir:102962	KC5a phiC2 EJ-1	100 % 28 % 28 %
Ne1	protein:vir:105467 protein:vir:79034 protein:vir:102338	KC5a phiC2 phi CD119	100 % 28 % 25 %
Tc1	protein:vir:105468 protein:vir:79047 protein:vir:102339	KC5a phiC2 phi CD119	89 % 20 % 17 %