Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiSM101 | Genbank acc : NC_008265 | Aclame index mge :1641

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	12	lcl\|Aclame:protein:vir:102119\|NCBI_annot:phage	HHsearch (proba=100.00%)
Portal	14	lcl\|Aclame:protein:vir:102118\|NCBI_annot:phage	HHsearch (proba=100.00%)
TermL	15	lcl\|Aclame:protein:vir:102145\|NCBI_annot:phage	Blast (e-value=0)
MTP	7	lcl\|Aclame:protein:vir:102112\|NCBI_annot:phage	Blast (e-value=1e-123)
Sheath	NOT FOUND
Ad1	11	lcl\|Aclame:protein:vir:102158\|NCBI_annot:uncharacterized	HHsearch (proba=100.00%)
Hc1	10	lcl\|Aclame:protein:vir:102144\|NCBI_annot:phage	HHsearch (proba=100.00%)
Ne1	8	lcl\|Aclame:protein:vir:102154\|NCBI_annot:phage	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102119 protein:vir:81160 protein:vir:102082	phiSM101 Geobacillus virus E2 Fah	100 % 35 % 33 %
Portal	protein:vir:102118 protein:vir:102080 protein:vir:102855	phiSM101 Fah Cherry	100 % 56 % 56 %
TermL	protein:vir:102145 protein:vir:81178 protein:vir:1379	phiSM101 Geobacillus virus E2 phi3626	100 % 36 % 35 %
MTP	protein:vir:102112 protein:vir:102037 protein:vir:102845	phiSM101 Fah Cherry	100 % 23 % 23 %
Ad1	protein:vir:102158 protein:vir:81159 protein:vir:102083	phiSM101 Geobacillus virus E2 Fah	100 % 48 % 44 %
Hc1	protein:vir:102144 protein:vir:1385 protein:vir:1890	phiSM101 phi3626 HK022	100 % 29 % 28 %
Ne1	protein:vir:102154 protein:vir:80362 protein:vir:102085	phiSM101 phi644-2 Fah	100 % 27 % 27 %