Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PSP3 | Genbank acc : NC_005340 | Aclame index mge :1533

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 42

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:98566\|NCBI_annot:gp5\|genbank:acc:NP_958060;genbank:gi:41057357;genbank:GeneID	HHsearch (proba=100.00%)
Portal	1	lcl\|Aclame:protein:vir:98567\|NCBI_annot:gp1\|genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:98555\|NCBI_annot:gp3\|genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID	Blast (e-value=0)
MTP	22	lcl\|Aclame:protein:vir:98546\|NCBI_annot:gp22\|genbank:acc:NP_958077;genbank:gi:41057374;genbank:GeneI	Blast (e-value=2e-99)
Sheath	21	lcl\|Aclame:protein:vir:98553\|NCBI_annot:gp21\|genbank:acc:NP_958076;genbank:gi:41057373;genbank:GeneI	HHsearch (proba=100.00%)
Ad1	7	lcl\|Aclame:protein:vir:98558\|NCBI_annot:gp7\|genbank:acc:NP_958062;genbank:gi:41057359;genbank:GeneID	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	14	lcl\|Aclame:protein:vir:98557\|NCBI_annot:gp14\|genbank:acc:NP_958069;genbank:gi:41057366;genbank:GeneI	HHsearch (proba=100.00%)
Tc1	13	lcl\|Aclame:protein:vir:98561\|NCBI_annot:gp13\|genbank:acc:NP_958068;genbank:gi:41057365;genbank:GeneI	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	6	4
Ne1<->Ad1	7	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98566 protein:vir:1829 protein:vir:2016	PSP3 186 P2	100 % 93 % 76 %
Portal	protein:vir:98567 protein:vir:2013 protein:vir:6058	PSP3 P2 WPhi	100 % 77 % 77 %
TermL	protein:vir:98555 protein:vir:2014 protein:vir:6059	PSP3 P2 WPhi	100 % 89 % 89 %
MTP	protein:vir:98546 protein:vir:1846 protein:vir:2036	PSP3 186 P2	100 % 99 % 74 %
Sheath	protein:vir:98553 protein:vir:1845 protein:vir:6079	PSP3 186 WPhi	100 % 93 % 88 %
Ad1	protein:vir:98558 protein:vir:1831 protein:vir:5696	PSP3 186 L-413C	100 % 96 % 68 %
Ne1	protein:vir:98557 protein:vir:1838 protein:vir:2026	PSP3 186 P2	100 % 91 % 52 %
Tc1	protein:vir:98561 protein:vir:1837 protein:vir:5702	PSP3 186 L-413C	100 % 94 % 73 %