Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : EJ-1 | Genbank acc : NC_005294 | Aclame index mge :1461

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 73

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	47	lcl\|Aclame:protein:vir:102944\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	40	lcl\|Aclame:protein:vir:102950\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	39	lcl\|Aclame:protein:vir:102941\|NCBI_annot:terminase,	Blast (e-value=0)
MTP	54	lcl\|Aclame:protein:vir:102914\|NCBI_annot:core	Blast (e-value=6e-87)
Sheath	53	lcl\|Aclame:protein:vir:102957\|NCBI_annot:sheath	HHsearch (proba=100.00%)
Ad1	48	lcl\|Aclame:protein:vir:102961\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	49	lcl\|Aclame:protein:vir:102962\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	50	lcl\|Aclame:protein:vir:102963\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	51	lcl\|Aclame:protein:vir:102955\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102944 protein:vir:5974 protein:vir:78387	EJ-1 SPP1 SETP3	100 % 40 % 32 %
Portal	protein:vir:102950 protein:vir:105461 protein:vir:102330	EJ-1 KC5a phi CD119	100 % 41 % 40 %
TermL	protein:vir:102941 protein:vir:106551 protein:vir:1235	EJ-1 Lj965 phi ETA	100 % 54 % 25 %
MTP	protein:vir:102914 protein:vir:79038 protein:vir:105471	EJ-1 phiC2 KC5a	100 % 40 % 33 %
Sheath	protein:vir:102957 protein:vir:78986 protein:vir:105470	EJ-1 phiC2 KC5a	100 % 37 % 37 %
Ad1	protein:vir:102961 protein:vir:79050 protein:vir:3615	EJ-1 phiC2 TP901-1	100 % 20 % 19 %
Hc1	protein:vir:102962 protein:vir:78985 protein:vir:105466	EJ-1 phiC2 KC5a	100 % 29 % 28 %
Ne1	protein:vir:102963 protein:vir:102338 protein:vir:79034	EJ-1 phi CD119 phiC2	100 % 34 % 29 %
Tc1	protein:vir:102955 protein:vir:79047 protein:vir:105468	EJ-1 phiC2 KC5a	100 % 24 % 17 %