Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiC2 | Genbank acc : NC_009231 | Aclame index mge :1861

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 82

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:79008\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:79043\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:79016\|NCBI_annot:putative	Blast (e-value=0)
MTP	14	lcl\|Aclame:protein:vir:79038\|NCBI_annot:putative	Blast (e-value=5e-90)
Sheath	13	lcl\|Aclame:protein:vir:78986\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad1	9	lcl\|Aclame:protein:vir:79050\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	10	lcl\|Aclame:protein:vir:78985\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	11	lcl\|Aclame:protein:vir:79034\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:79047\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79008 protein:vir:105464 protein:vir:99523	phiC2 KC5a Lj928	100 % 41 % 27 %
Portal	protein:vir:79043 protein:vir:96839 protein:vir:93747	phiC2 EW 55	100 % 39 % 39 %
TermL	protein:vir:79016 protein:vir:95761 protein:vir:97165	phiC2 SMP 85	100 % 32 % 28 %
MTP	protein:vir:79038 protein:vir:102914 protein:vir:105471	phiC2 EJ-1 KC5a	100 % 40 % 35 %
Sheath	protein:vir:78986 protein:vir:102957 protein:vir:105470	phiC2 EJ-1 KC5a	100 % 37 % 29 %
Ad1	protein:vir:79050 protein:vir:102961 protein:vir:102336	phiC2 EJ-1 phi CD119	100 % 20 % 24 %
Hc1	protein:vir:78985 protein:vir:102962 protein:vir:105466	phiC2 EJ-1 KC5a	100 % 29 % 28 %
Ne1	protein:vir:79034 protein:vir:102963 protein:vir:102338	phiC2 EJ-1 phi CD119	100 % 29 % 29 %
Tc1	protein:vir:79047 protein:vir:102955 protein:vir:105468	phiC2 EJ-1 KC5a	100 % 25 % 22 %