Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi CD119 | Genbank acc : NC_007917 | Aclame index mge :1566

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 76

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|Aclame:protein:vir:102335\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:102330\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:102358\|NCBI_annot:putative	Blast (e-value=0)
MTP	15	lcl\|Aclame:protein:vir:102360\|NCBI_annot:XkdM	Blast (e-value=7e-81)
Sheath	14	lcl\|Aclame:protein:vir:102359\|NCBI_annot:XkdK	HHsearch (proba=100.00%)
Ad1	10	lcl\|Aclame:protein:vir:102336\|NCBI_annot:hypothetical	HHsearch (proba=99.92%)
Hc1	11	lcl\|Aclame:protein:vir:102337\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	12	lcl\|Aclame:protein:vir:102338\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	13	lcl\|Aclame:protein:vir:102339\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102335 protein:vir:78090 protein:vir:99523	phi CD119 P35 Lj928	100 % 28 % 27 %
Portal	protein:vir:102330 protein:vir:102950 protein:vir:105461	phi CD119 EJ-1 KC5a	100 % 41 % 34 %
TermL	protein:vir:102358 protein:vir:3963 protein:vir:3608	phi CD119 ul36 TP901-1	100 % 51 % 51 %
MTP	protein:vir:102360 protein:vir:102914 protein:vir:79038	phi CD119 EJ-1 phiC2	100 % 27 % 23 %
Sheath	protein:vir:102359 protein:vir:102957 protein:vir:105470	phi CD119 EJ-1 KC5a	100 % 21 % 19 %
Ad1	protein:vir:102336 protein:vir:79050 protein:vir:94507	phi CD119 phiC2 phiJL-1	100 % 23 % 28 %
Hc1	protein:vir:102337 protein:vir:102962 protein:vir:78985	phi CD119 EJ-1 phiC2	100 % 27 % 22 %
Ne1	protein:vir:102338 protein:vir:102963 protein:vir:79034	phi CD119 EJ-1 phiC2	100 % 34 % 29 %
Tc1	protein:vir:102339 protein:vir:79047 protein:vir:105468	phi CD119 phiC2 KC5a	100 % 19 % 14 %