Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiE125 | Genbank acc : NC_003309 | Aclame index mge :30

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:1433\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:1431\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:1429\|NCBI_annot:putative	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:1439\|NCBI_annot:putative	Blast (e-value=5e-87)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:1435\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:1436\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:1437\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:1438\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1433 protein:vir:80376 protein:vir:5739	phiE125 phi644-2 PY54	100 % 97 % 50 %
Portal	protein:vir:1431 protein:vir:80333 protein:vir:105064	phiE125 phi644-2 phiKO2	100 % 94 % 49 %
TermL	protein:vir:1429 protein:vir:100097 protein:vir:80335	phiE125 phi1026b phi644-2	100 % 95 % 88 %
MTP	protein:vir:1439 protein:vir:100083 protein:vir:100241	phiE125 phi1026b Bcep176	100 % 98 % 80 %
Ad1	protein:vir:1435 protein:vir:80320 protein:vir:100103	phiE125 phi644-2 phi1026b	100 % 90 % 23 %
Hc1	protein:vir:1436 protein:vir:80342 protein:vir:100134	phiE125 phi644-2 phi1026b	100 % 93 % 64 %
Ne1	protein:vir:1437 protein:vir:100075 protein:vir:80362	phiE125 phi1026b phi644-2	100 % 99 % 94 %
Tc1	protein:vir:1438 protein:vir:100116 protein:vir:80371	phiE125 phi1026b phi644-2	100 % 99 % 95 %