Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : VHML | Genbank acc : NC_004456 | Aclame index mge :182

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 57

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	26	lcl\|Aclame:protein:vir:10324\|NCBI_annot:ORF26\|genbank:acc:NP_758919;genbank:gi:27311193;genbank:Gene	HHsearch (proba=100.00%)
Portal	23	lcl\|Aclame:protein:vir:10321\|NCBI_annot:ORF23\|genbank:acc:NP_758916;genbank:gi:27311190;genbank:Gene	HHsearch (proba=100.00%)
TermL	22	lcl\|Aclame:protein:vir:10320\|NCBI_annot:ORF22\|genbank:acc:NP_758915;genbank:gi:27311189;genbank:Gene	Blast (e-value=0)
MTP	39	lcl\|Aclame:protein:vir:10337\|NCBI_annot:ORF40\|genbank:acc:NP_758932;genbank:gi:27311208;genbank:Gene	Blast (e-value=3e-95)
Sheath	38	lcl\|Aclame:protein:vir:10336\|NCBI_annot:ORF39\|genbank:acc:NP_758931;genbank:gi:27311206;genbank:Gene	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	28	lcl\|Aclame:protein:vir:10326\|NCBI_annot:ORF28\|genbank:acc:NP_758921;genbank:gi:27311195;genbank:Gene	HHsearch (proba=100.00%)
Tc1	29	lcl\|Aclame:protein:vir:10327\|NCBI_annot:ORF29\|genbank:acc:NP_758922;genbank:gi:27311196;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:10324 protein:vir:95258 protein:vir:6378	VHML Felix 01 BcepNazgul	100 % 29 % 14 %
Portal	protein:vir:10321 protein:vir:79538 protein:vir:96738	VHML cdtI VP882	100 % 22 % 20 %
TermL	protein:vir:10320 protein:vir:387 protein:vir:3418	VHML N15 lambda	100 % 30 % 29 %
MTP	protein:vir:10337 protein:vir:79133 protein:vir:98546	VHML RSA1 PSP3	100 % 37 % 36 %
Sheath	protein:vir:10336 protein:vir:1172 protein:vir:79181	VHML phi CTX phiE202	100 % 41 % 40 %
Ne1	protein:vir:10326 protein:vir:96763 protein:vir:3427	VHML VP882 lambda	100 % 41 % 31 %
Tc1	protein:vir:10327 protein:vir:96764 protein:vir:1994	VHML VP882 Mu	100 % 22 % 14 %