Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 26 lcl|Aclame:protein:vir:10324|NCBI_annot:ORF26|genbank:acc:NP_758919;genbank:gi:27311193;genbank:Gene HHsearch (proba=100.00%)
Portal 23 lcl|Aclame:protein:vir:10321|NCBI_annot:ORF23|genbank:acc:NP_758916;genbank:gi:27311190;genbank:Gene HHsearch (proba=100.00%)
TermL 22 lcl|Aclame:protein:vir:10320|NCBI_annot:ORF22|genbank:acc:NP_758915;genbank:gi:27311189;genbank:Gene Blast (e-value=0)
MTP 39 lcl|Aclame:protein:vir:10337|NCBI_annot:ORF40|genbank:acc:NP_758932;genbank:gi:27311208;genbank:Gene Blast (e-value=3e-95)
Sheath 38 lcl|Aclame:protein:vir:10336|NCBI_annot:ORF39|genbank:acc:NP_758931;genbank:gi:27311206;genbank:Gene HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 28 lcl|Aclame:protein:vir:10326|NCBI_annot:ORF28|genbank:acc:NP_758921;genbank:gi:27311195;genbank:Gene HHsearch (proba=100.00%)
Tc1 29 lcl|Aclame:protein:vir:10327|NCBI_annot:ORF29|genbank:acc:NP_758922;genbank:gi:27311196;genbank:Gene HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:10324
protein:vir:95258
protein:vir:6378
VHML
Felix 01
BcepNazgul
100 %
29 %
14 %
Portal protein:vir:10321
protein:vir:79538
protein:vir:96738
VHML
cdtI
VP882
100 %
22 %
20 %
TermL protein:vir:10320
protein:vir:387
protein:vir:3418
VHML
N15
lambda
100 %
30 %
29 %
MTP protein:vir:10337
protein:vir:79133
protein:vir:98546
VHML
RSA1
PSP3
100 %
37 %
36 %
Sheath protein:vir:10336
protein:vir:1172
protein:vir:79181
VHML
phi CTX
phiE202
100 %
41 %
40 %
Ne1 protein:vir:10326
protein:vir:96763
protein:vir:3427
VHML
VP882
lambda
100 %
41 %
31 %
Tc1 protein:vir:10327
protein:vir:96764
protein:vir:1994
VHML
VP882
Mu
100 %
22 %
14 %