Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 8 lcl|Aclame:protein:vir:94142|NCBI_annot:ORF013|genbank:acc:YP_240234;genbank:gi:66395898;genbank:Gen HHsearch (proba=100.00%)
Portal 3 lcl|Aclame:protein:vir:94101|NCBI_annot:ORF007|genbank:acc:YP_240229;genbank:gi:66395892;genbank:Gen HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:94084|NCBI_annot:ORF009|genbank:acc:YP_240228;genbank:gi:66395894;genbank:Gen Blast (e-value=0)
MTP 15 lcl|Aclame:protein:vir:94128|NCBI_annot:ORF020|genbank:acc:YP_240241;genbank:gi:66395905;genbank:Gen Blast (e-value=1e-108)
Sheath NOT FOUND
Ad1 10 lcl|Aclame:protein:vir:94126|NCBI_annot:ORF041|genbank:acc:YP_240236;genbank:gi:66395926;genbank:Gen HHsearch (proba=100.00%)
Hc1 11 lcl|Aclame:protein:vir:94092|NCBI_annot:ORF044|genbank:acc:YP_240237;genbank:gi:66395929;genbank:Gen HHsearch (proba=100.00%)
Ne1 12 lcl|Aclame:protein:vir:94108|NCBI_annot:ORF029|genbank:acc:YP_240238;genbank:gi:66395914;genbank:Gen HHsearch (proba=100.00%)
Tc1 14 lcl|Aclame:protein:vir:94096|NCBI_annot:ORF031|genbank:acc:YP_240240;genbank:gi:66395916;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:105905
protein:vir:94142
protein:vir:41
phiETA3
96
A118
100 %
100 %
44 %
Portal protein:vir:105889
protein:vir:94101
protein:vir:9871
phiETA3
96
315.5
100 %
100 %
26 %
TermL protein:vir:105897
protein:vir:94084
protein:vir:4897
phiETA3
96
Sfi11
100 %
100 %
51 %
MTP protein:vir:96311
protein:vir:105912
protein:vir:94128
ROSA
phiETA3
96
100 %
100 %
100 %
Ad1 protein:vir:105899
protein:vir:94126
protein:vir:96831
phiETA3
96
EW
100 %
100 %
31 %
Hc1 protein:vir:94092
protein:vir:96294
protein:vir:105908
96
ROSA
phiETA3
100 %
97 %
97 %
Ne1 protein:vir:94108
protein:vir:105916
protein:vir:96288
96
phiETA3
ROSA
100 %
99 %
88 %
Tc1 protein:vir:96260
protein:vir:105892
protein:vir:94096
ROSA
phiETA3
96
100 %
100 %
100 %