Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CNPH82 | Genbank acc : NC_008722 | Aclame index mge :1571

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 65

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:107120\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:107112\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:107098\|NCBI_annot:putative	Blast (e-value=0)
MTP	14	lcl\|Aclame:protein:vir:107114\|NCBI_annot:hypothetical	Blast (e-value=1e-103)
Sheath	NOT FOUND
Ad1	10	lcl\|Aclame:protein:vir:107119\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Hc1	11	lcl\|Aclame:protein:vir:107100\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Ne1	12	lcl\|Aclame:protein:vir:107099\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Tc1	13	lcl\|Aclame:protein:vir:107096\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107120 protein:vir:97331 protein:vir:94800	CNPH82 52A 29	100 % 84 % 84 %
Portal	protein:vir:107112 protein:vir:105292 protein:vir:96839	CNPH82 PH15 EW	100 % 98 % 77 %
TermL	protein:vir:107098 protein:vir:105297 protein:vir:97448	CNPH82 PH15 92	100 % 98 % 92 %
MTP	protein:vir:105312 protein:vir:107114 protein:vir:97420	PH15 CNPH82 92	100 % 100 % 78 %
Ad1	protein:vir:105327 protein:vir:107119 protein:vir:96128	PH15 CNPH82 37	100 % 100 % 64 %
Hc1	protein:vir:107100 protein:vir:105322 protein:vir:97328	CNPH82 PH15 52A	100 % 97 % 78 %
Ne1	protein:vir:107099 protein:vir:105330 protein:vir:95062	CNPH82 PH15 X2	100 % 98 % 84 %
Tc1	protein:vir:107096 protein:vir:105337 protein:vir:1244	CNPH82 PH15 phi ETA	100 % 99 % 93 %