Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : SPP1 | Genbank acc : NC_004166 | Aclame index mge :125

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 101

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	23	lcl\|Aclame:protein:vir:5974\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	10	lcl\|Aclame:protein:vir:5961\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:5954\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	30	lcl\|Aclame:protein:vir:5980\|NCBI_annot:hypothetical	Blast (e-value=1e-101)
Sheath	NOT FOUND
Ad1	25	lcl\|Aclame:protein:vir:5976\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	26	lcl\|Aclame:protein:vir:5977\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	27	lcl\|Aclame:protein:vir:5978\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	28	lcl\|Aclame:protein:vir:5979\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5974 protein:vir:102944 protein:vir:94989	SPP1 EJ-1 KS7	100 % 41 % 34 %
Portal	protein:vir:5961 protein:vir:79043 protein:vir:97336	SPP1 phiC2 52A	100 % 36 % 34 %
TermL	protein:vir:5954 protein:vir:9870 protein:vir:105297	SPP1 315.5 PH15	100 % 62 % 60 %
MTP	protein:vir:5980 protein:vir:94505 protein:vir:9932	SPP1 phiJL-1 315.6	100 % 39 % 35 %
Ad1	protein:vir:5976 protein:vir:97430 protein:vir:95071	SPP1 92 X2	100 % 37 % 37 %
Hc1	protein:vir:5977 protein:vir:1890 protein:vir:96294	SPP1 HK022 ROSA	100 % 27 % 27 %
Ne1	protein:vir:5978 protein:vir:97327 protein:vir:1243	SPP1 52A phi ETA	100 % 43 % 43 %
Tc1	protein:vir:5979 protein:vir:105337 protein:vir:97421	SPP1 PH15 92	100 % 30 % 30 %