Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : r1t | Genbank acc : NC_004302 | Aclame index mge :33

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	31	lcl\|Aclame:protein:vir:1638\|NCBI_annot:Structural	HHsearch (proba=100.00%)
Portal	27	lcl\|Aclame:protein:vir:1634\|NCBI_annot:Structural	HHsearch (proba=100.00%)
TermL	29	lcl\|Aclame:protein:vir:1636\|NCBI_annot:putative	Blast (e-value=0)
MTP	37	lcl\|Aclame:protein:vir:1644\|NCBI_annot:Structural	Blast (e-value=1e-105)
Sheath	NOT FOUND
Ad1	33	lcl\|Aclame:protein:vir:1640\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	34	lcl\|Aclame:protein:vir:1641\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	35	lcl\|Aclame:protein:vir:1642\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	36	lcl\|Aclame:protein:vir:1643\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1638 protein:vir:94771 protein:vir:9759	r1t phi LC3 315.3	100 % 99 % 62 %
Portal	protein:vir:1634 protein:vir:94742 protein:vir:9568	r1t phi LC3 SM1	100 % 98 % 70 %
TermL	protein:vir:1636 protein:vir:94734 protein:vir:9572	r1t phi LC3 SM1	100 % 99 % 73 %
MTP	protein:vir:1644 protein:vir:94739 protein:vir:9580	r1t phi LC3 SM1	100 % 98 % 61 %
Ad1	protein:vir:1640 protein:vir:94761 protein:vir:9576	r1t phi LC3 SM1	100 % 96 % 76 %
Hc1	protein:vir:1641 protein:vir:94767 protein:vir:9762	r1t phi LC3 315.3	100 % 98 % 69 %
Ne1	protein:vir:94763 protein:vir:1642 protein:vir:9763	phi LC3 r1t 315.3	100 % 100 % 67 %
Tc1	protein:vir:1643 protein:vir:94768 protein:vir:9764	r1t phi LC3 315.3	100 % 99 % 64 %