Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 77 | Genbank acc : NC_005356 | Aclame index mge :1476

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 69

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:100632\|NCBI_annot:77ORF006\|genbank:acc:NP_958606;genbank:gi:41189521;genbank:	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:100650\|NCBI_annot:77ORF008\|genbank:acc:NP_958604;genbank:gi:41189523;genbank:	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:100634\|NCBI_annot:77ORF003\|genbank:acc:NP_958603;genbank:gi:41189518;genbank:	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:100637\|NCBI_annot:77ORF020\|genbank:acc:NP_958612;genbank:gi:41189535;genbank:	Blast (e-value=1e-124)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:100669\|NCBI_annot:77ORF042\|genbank:acc:NP_958608;genbank:gi:41189553;genbank:	HHsearch (proba=100.00%)
Hc1	8	lcl\|Aclame:protein:vir:100673\|NCBI_annot:77ORF033\|genbank:acc:NP_958609;genbank:gi:41189545;genbank:	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:100652\|NCBI_annot:77ORF029\|genbank:acc:NP_958610;genbank:gi:41189542;genbank:	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:100675\|NCBI_annot:77ORF027\|genbank:acc:NP_958611;genbank:gi:41189540;genbank:	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100632 protein:vir:101291 protein:vir:9509	77 phiNM3 phiN315	100 % 98 % 98 %
Portal	protein:vir:101289 protein:vir:100650 protein:vir:9507	phiNM3 77 phiN315	100 % 100 % 100 %
TermL	protein:vir:101288 protein:vir:100634 protein:vir:9506	phiNM3 77 phiN315	100 % 100 % 100 %
MTP	protein:vir:100637 protein:vir:9515 protein:vir:101304	77 phiN315 phiNM3	100 % 100 % 97 %
Ad1	protein:vir:101300 protein:vir:100669 protein:vir:9511	phiNM3 77 phiN315	100 % 100 % 100 %
Hc1	protein:vir:101301 protein:vir:100673 protein:vir:9512	phiNM3 77 phiN315	100 % 100 % 100 %
Ne1	protein:vir:100652 protein:vir:101302 protein:vir:9513	77 phiNM3 phiN315	100 % 81 % 81 %
Tc1	protein:vir:101303 protein:vir:100675 protein:vir:9514	phiNM3 77 phiN315	100 % 100 % 100 %