Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi644-2 | Genbank acc : NC_009235 | Aclame index mge :1881

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:80376\|NCBI_annot:gp6,	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:80333\|NCBI_annot:gp4,	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:80335\|NCBI_annot:gp2,	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:80349\|NCBI_annot:gp12\|genbank:acc:YP_001111091;genbank:gi:134288619;genbank:G	Blast (e-value=1e-117)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:80320\|NCBI_annot:gp8,	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:80342\|NCBI_annot:gp9,	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:80362\|NCBI_annot:gp10,	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:80371\|NCBI_annot:gp11\|genbank:acc:YP_001111090;genbank:gi:134288622;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:80376 protein:vir:1433 protein:vir:105038	phi644-2 phiE125 phiKO2	100 % 97 % 49 %
Portal	protein:vir:80333 protein:vir:1431 protein:vir:105064	phi644-2 phiE125 phiKO2	100 % 94 % 50 %
TermL	protein:vir:80335 protein:vir:1429 protein:vir:100097	phi644-2 phiE125 phi1026b	100 % 88 % 85 %
MTP	protein:vir:80349 protein:vir:100083 protein:vir:1439	phi644-2 phi1026b phiE125	100 % 73 % 73 %
Ad1	protein:vir:80320 protein:vir:1435 protein:vir:100103	phi644-2 phiE125 phi1026b	100 % 90 % 25 %
Hc1	protein:vir:80342 protein:vir:1436 protein:vir:100134	phi644-2 phiE125 phi1026b	100 % 93 % 63 %
Ne1	protein:vir:80362 protein:vir:100075 protein:vir:1437	phi644-2 phi1026b phiE125	100 % 96 % 94 %
Tc1	protein:vir:80371 protein:vir:100116 protein:vir:1438	phi644-2 phi1026b phiE125	100 % 96 % 95 %