Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Che9c | Genbank acc : NC_004683 | Aclame index mge :152

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 84

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:8102\|NCBI_annot:gp6\|genbank:acc:NP_817683;genbank:gi:29566114;genbank:GeneID:	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:8100\|NCBI_annot:gp4\|genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:8098\|NCBI_annot:gp2\|genbank:acc:NP_817679;genbank:gi:29566110;genbank:GeneID:	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:8108\|NCBI_annot:gp12\|genbank:acc:NP_817689;genbank:gi:29566120;genbank:GeneID	Blast (e-value=1e-157)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:8104\|NCBI_annot:gp8\|genbank:acc:NP_817685;genbank:gi:29566116;genbank:GeneID:	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:8105\|NCBI_annot:gp9\|genbank:acc:NP_817686;genbank:gi:29566117;genbank:GeneID:	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:8106\|NCBI_annot:gp10\|genbank:acc:NP_817687;genbank:gi:29566118;genbank:GeneID	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:8107\|NCBI_annot:gp11\|genbank:acc:NP_817688;genbank:gi:29566119;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8102 protein:vir:4456 protein:vir:485	Che9c ST64B P27	100 % 22 % 21 %
Portal	protein:vir:8100 protein:vir:80333 protein:vir:100187	Che9c phi644-2 phi AT3	100 % 17 % 17 %
TermL	protein:vir:8098 protein:vir:99071 protein:vir:80678	Che9c Wildcat PA6	100 % 26 % 24 %
MTP	protein:vir:8108 protein:vir:8332 protein:vir:102610	Che9c Corndog Llij	100 % 42 % 40 %
Ad1	protein:vir:8104 protein:vir:8326 protein:vir:8430	Che9c Corndog Omega	100 % 42 % 34 %
Hc1	protein:vir:8105 protein:vir:8431 protein:vir:8328	Che9c Omega Corndog	100 % 37 % 34 %
Ne1	protein:vir:8106 protein:vir:7993 protein:vir:102608	Che9c Che8 Llij	100 % 35 % 33 %
Tc1	protein:vir:8107 protein:vir:8331 protein:vir:102609	Che9c Corndog Llij	100 % 34 % 31 %