Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Xp15 | Genbank acc : NC_007024 | Aclame index mge :1538

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 84

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	10	lcl\|Aclame:protein:vir:94933\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	8	lcl\|Aclame:protein:vir:94956\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	7	lcl\|Aclame:protein:vir:94970\|NCBI_annot:putative	Blast (e-value=0)
MTP	16	lcl\|Aclame:protein:vir:94939\|NCBI_annot:possible	Blast (e-value=5e-08)
Sheath	NOT FOUND
Ad1	12	lcl\|Aclame:protein:vir:94955\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	13	lcl\|Aclame:protein:vir:94910\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	14	lcl\|Aclame:protein:vir:94944\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	15	lcl\|Aclame:protein:vir:94921\|NCBI_annot:possible	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94933 protein:vir:97255 protein:vir:5739	Xp15 M6 PY54	100 % 59 % 18 %
Portal	protein:vir:94956 protein:vir:95149 protein:vir:80453	Xp15 PA73 BcepGomr	100 % 26 % 24 %
TermL	protein:vir:94970 protein:vir:95130 protein:vir:97250	Xp15 PA73 M6	100 % 30 % 30 %
MTP	protein:vir:78378 protein:vir:80398 protein:vir:97240	SETP3 BcepGomr M6	23 % 17 % 17 %
Ad1	protein:vir:94955 protein:vir:97267 protein:vir:95176	Xp15 M6 PA73	100 % 25 % 22 %
Hc1	protein:vir:94910 protein:vir:97237	Xp15 M6	100 % 16 %
Ne1	protein:vir:94944 protein:vir:78380 protein:vir:94994	Xp15 SETP3 KS7	100 % 29 % 27 %
Tc1	protein:vir:94921 protein:vir:95155 protein:vir:80429	Xp15 PA73 BcepGomr	100 % 30 % 26 %