Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 47 lcl|Aclame:protein:vir:78830|NCBI_annot:major HHsearch (proba=100.00%)
Portal 42 lcl|Aclame:protein:vir:78805|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 41 lcl|Aclame:protein:vir:78831|NCBI_annot:terminase Blast (e-value=0)
MTP 53 lcl|Aclame:protein:vir:78825|NCBI_annot:major Blast (e-value=1e-113)
Sheath NOT FOUND
Ad1 49 lcl|Aclame:protein:vir:78849|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 50 lcl|Aclame:protein:vir:78844|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 51 lcl|Aclame:protein:vir:78858|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 52 lcl|Aclame:protein:vir:78854|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:78830
protein:vir:96392
protein:vir:103955
80alpha
53
phiNM
100 %
100 %
99 %
Portal protein:vir:78805
protein:vir:96366
protein:vir:96240
80alpha
53
69
100 %
100 %
99 %
TermL protein:vir:78831
protein:vir:96370
protein:vir:103950
80alpha
53
phiNM
100 %
100 %
100 %
MTP protein:vir:78825
protein:vir:96352
protein:vir:97120
80alpha
53
85
100 %
100 %
99 %
Ad1 protein:vir:78849
protein:vir:103957
protein:vir:97145
80alpha
phiNM
85
100 %
100 %
100 %
Hc1 protein:vir:78844
protein:vir:99782
protein:vir:103916
80alpha
phiETA2
phiNM
100 %
98 %
97 %
Ne1 protein:vir:78858
protein:vir:103917
protein:vir:97144
80alpha
phiNM
85
100 %
100 %
100 %
Tc1 protein:vir:78854
protein:vir:96355
protein:vir:103918
80alpha
53
phiNM
100 %
100 %
99 %