Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PA73 | Genbank acc : NC_007806 | Aclame index mge :1552

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 52

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	10	lcl\|Aclame:protein:vir:95131\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	7	lcl\|Aclame:protein:vir:95149\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	6	lcl\|Aclame:protein:vir:95130\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	16	lcl\|Aclame:protein:vir:95133\|NCBI_annot:hypothetical	Blast (e-value=0)
Sheath	NOT FOUND
Ad1	13	lcl\|Aclame:protein:vir:95176\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	14	lcl\|Aclame:protein:vir:95145\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	19	lcl\|Aclame:protein:vir:95157\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	15	lcl\|Aclame:protein:vir:95155\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	5	2
Ne1<->Ad1	6	3
Ne1<->Tc1	4	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95131 protein:vir:96792 protein:vir:5974	PA73 phiHSIC SPP1	100 % 29 % 16 %
Portal	protein:vir:95149 protein:vir:80453 protein:vir:78393	PA73 BcepGomr SETP3	100 % 46 % 35 %
TermL	protein:vir:95130 protein:vir:80432 protein:vir:97250	PA73 BcepGomr M6	100 % 56 % 40 %
MTP	protein:vir:95133 protein:vir:97240 protein:vir:80398	PA73 M6 BcepGomr	100 % 57 % 49 %
Ad1	protein:vir:95176 protein:vir:78383 protein:vir:95004	PA73 SETP3 KS7	100 % 35 % 35 %
Hc1	protein:vir:95145 protein:vir:97237 protein:vir:80382	PA73 M6 BcepGomr	100 % 31 % 24 %
Ne1	protein:vir:95157 protein:vir:97190 protein:vir:80425	PA73 M6 BcepGomr	100 % 41 % 31 %
Tc1	protein:vir:95155 protein:vir:97211 protein:vir:80429	PA73 M6 BcepGomr	100 % 39 % 32 %