Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 27 lcl|Aclame:protein:vir:104342|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Portal 23 lcl|Aclame:protein:vir:104338|NCBI_annot:putative HHsearch (proba=100.00%)
TermL 21 lcl|Aclame:protein:vir:104336|NCBI_annot:putative Blast (e-value=0)
MTP 33 lcl|Aclame:protein:vir:104349|NCBI_annot:putative Blast (e-value=1e-126)
Sheath NOT FOUND
Ad1 29 lcl|Aclame:protein:vir:104344|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 30 lcl|Aclame:protein:vir:104346|NCBI_annot:conserved HHsearch (proba=100.00%)
Ne1 31 lcl|Aclame:protein:vir:104347|NCBI_annot:conserved HHsearch (proba=100.00%)
Tc1 32 lcl|Aclame:protein:vir:104348|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104342
protein:vir:103285
protein:vir:107687
RTP
JK06
T1
100 %
73 %
50 %
Portal protein:vir:104338
protein:vir:103219
protein:vir:107662
RTP
JK06
T1
100 %
79 %
54 %
TermL protein:vir:104336
protein:vir:103223
protein:vir:79648
RTP
JK06
TLS
100 %
77 %
56 %
MTP protein:vir:104349
protein:vir:103277
protein:vir:79636
RTP
JK06
TLS
100 %
63 %
53 %
Ad1 protein:vir:104344
protein:vir:79640
protein:vir:103283
RTP
TLS
JK06
100 %
48 %
46 %
Hc1 protein:vir:104346
protein:vir:79639
protein:vir:107669
RTP
TLS
T1
100 %
54 %
40 %
Ne1 protein:vir:104347
protein:vir:103280
protein:vir:79638
RTP
JK06
TLS
100 %
59 %
44 %
Tc1 protein:vir:104348
protein:vir:103278
protein:vir:79637
RTP
JK06
TLS
100 %
66 %
53 %