Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RTP | Genbank acc : NC_007603 | Aclame index mge :1593

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 75

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	27	lcl\|Aclame:protein:vir:104342\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	23	lcl\|Aclame:protein:vir:104338\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	21	lcl\|Aclame:protein:vir:104336\|NCBI_annot:putative	Blast (e-value=0)
MTP	33	lcl\|Aclame:protein:vir:104349\|NCBI_annot:putative	Blast (e-value=1e-126)
Sheath	NOT FOUND
Ad1	29	lcl\|Aclame:protein:vir:104344\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	30	lcl\|Aclame:protein:vir:104346\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Ne1	31	lcl\|Aclame:protein:vir:104347\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Tc1	32	lcl\|Aclame:protein:vir:104348\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104342 protein:vir:103285 protein:vir:107687	RTP JK06 T1	100 % 73 % 50 %
Portal	protein:vir:104338 protein:vir:103219 protein:vir:107662	RTP JK06 T1	100 % 79 % 54 %
TermL	protein:vir:104336 protein:vir:103223 protein:vir:79648	RTP JK06 TLS	100 % 77 % 56 %
MTP	protein:vir:104349 protein:vir:103277 protein:vir:79636	RTP JK06 TLS	100 % 63 % 53 %
Ad1	protein:vir:104344 protein:vir:79640 protein:vir:103283	RTP TLS JK06	100 % 48 % 46 %
Hc1	protein:vir:104346 protein:vir:79639 protein:vir:107669	RTP TLS T1	100 % 54 % 40 %
Ne1	protein:vir:104347 protein:vir:103280 protein:vir:79638	RTP JK06 TLS	100 % 59 % 44 %
Tc1	protein:vir:104348 protein:vir:103278 protein:vir:79637	RTP JK06 TLS	100 % 66 % 53 %