Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 949 | Genbank acc : NC_015263

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 154

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	143	lcl\|NC_015263.1_cdsid_YP_004306303.1	HHsearch (proba=97.74%)
Portal	146	lcl\|NC_015263.1_cdsid_YP_004306306.1	HHsearch (proba=100.00%)
TermL	147	lcl\|NC_015263.1_cdsid_YP_004306307.1	Blast (e-value=5e-42)
MTP	136	lcl\|NC_015263.1_cdsid_YP_004306296.1	Blast (e-value=5e-21)
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	139	lcl\|NC_015263.1_cdsid_YP_004306299.1	HHsearch (proba=78.96%)
Ne1	132	lcl\|NC_015263.1_cdsid_YP_004306292.1	HHsearch (proba=93.74%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	7	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9820 protein:vir:3033 protein:vir:105334	315.4 PhiNIH1.1 PH15	13 % 13 % 12 %
Portal	protein:vir:1266 protein:vir:483 protein:vir:102080	phi-105 P27 Fah	13 % 12 % 13 %
TermL	protein:vir:98854 protein:vir:78781 protein:vir:3781	F108 phiO18P HP2	18 % 16 % 16 %
MTP	protein:vir:6373 protein:vir:99223 protein:vir:99839	BcepNazgul DMS3 B3	18 % 15 % 14 %
Hc1	protein:vir:1385 protein:vir:104090 protein:vir:80342	phi3626 Che12 phi644-2	12 % 9 % 12 %
Ne1	protein:vir:79034 protein:vir:105467 protein:vir:81147	phiC2 KC5a Geobacillus virus E2	20 % 14 % 22 %