Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 57 lcl|Aclame:protein:vir:6378|NCBI_annot:capsid HHsearch (proba=100.00%)
Portal 61 lcl|Aclame:protein:vir:6382|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 63 lcl|Aclame:protein:vir:6384|NCBI_annot:terminase Blast (e-value=0)
MTP 52 lcl|Aclame:protein:vir:6373|NCBI_annot:hypothetical Blast (e-value=1e-153)
Sheath NOT FOUND
Ad1 62 lcl|Aclame:protein:vir:6383|NCBI_annot:head-tail HHsearch (proba=100.00%)
Hc1 55 lcl|Aclame:protein:vir:6376|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 54 lcl|Aclame:protein:vir:6375|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 53 lcl|Aclame:protein:vir:6374|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 7 2
Tc1<->Ad1 9 4
Ne1<->Ad1 8 3


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:6378
protein:vir:393
protein:vir:3424
BcepNazgul
N15
lambda
100 %
26 %
25 %
Portal protein:vir:6382
protein:vir:3420
protein:vir:389
BcepNazgul
lambda
N15
100 %
34 %
33 %
TermL protein:vir:6384
protein:vir:79539
protein:vir:387
BcepNazgul
cdtI
N15
100 %
39 %
21 %
MTP protein:vir:6373
protein:vir:79254
protein:vir:99223
BcepNazgul
Phage MP22
DMS3
100 %
19 %
19 %
Ad1 protein:vir:6383
protein:vir:3419
protein:vir:388
BcepNazgul
lambda
N15
100 %
37 %
35 %
Hc1 protein:vir:6376BcepNazgul100 %
Ne1 protein:vir:6375
protein:vir:396
protein:vir:96763
BcepNazgul
N15
VP882
100 %
18 %
15 %
Tc1 protein:vir:6374BcepNazgul100 %