Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : BcepNazgul | Genbank acc : NC_005091 | Aclame index mge :133

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 6) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 73

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	57	lcl\|Aclame:protein:vir:6378\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	61	lcl\|Aclame:protein:vir:6382\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	63	lcl\|Aclame:protein:vir:6384\|NCBI_annot:terminase	Blast (e-value=0)
MTP	52	lcl\|Aclame:protein:vir:6373\|NCBI_annot:hypothetical	Blast (e-value=1e-153)
Sheath	NOT FOUND
Ad1	62	lcl\|Aclame:protein:vir:6383\|NCBI_annot:head-tail	HHsearch (proba=100.00%)
Hc1	55	lcl\|Aclame:protein:vir:6376\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	54	lcl\|Aclame:protein:vir:6375\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	53	lcl\|Aclame:protein:vir:6374\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	7	2
Tc1<->Ad1	9	4
Ne1<->Ad1	8	3

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:6378 protein:vir:393 protein:vir:3424	BcepNazgul N15 lambda	100 % 26 % 25 %
Portal	protein:vir:6382 protein:vir:3420 protein:vir:389	BcepNazgul lambda N15	100 % 34 % 33 %
TermL	protein:vir:6384 protein:vir:79539 protein:vir:387	BcepNazgul cdtI N15	100 % 39 % 21 %
MTP	protein:vir:6373 protein:vir:79254 protein:vir:99223	BcepNazgul Phage MP22 DMS3	100 % 19 % 19 %
Ad1	protein:vir:6383 protein:vir:3419 protein:vir:388	BcepNazgul lambda N15	100 % 37 % 35 %
Hc1	protein:vir:6376	BcepNazgul	100 %
Ne1	protein:vir:6375 protein:vir:396 protein:vir:96763	BcepNazgul N15 VP882	100 % 18 % 15 %
Tc1	protein:vir:6374	BcepNazgul	100 %