Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : F108 | Genbank acc : NC_008193 | Aclame index mge :1495

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 40

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	19	lcl\|Aclame:protein:vir:98856\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	16	lcl\|Aclame:protein:vir:98853\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	17	lcl\|Aclame:protein:vir:98854\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	21	lcl\|Aclame:protein:vir:98858\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	23	lcl\|Aclame:protein:vir:98860\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	22	lcl\|Aclame:protein:vir:98859\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:98856 protein:vir:3783 protein:vir:3746	F108 HP2 HP1	100 % 42 % 42 %
Portal	protein:vir:98853 protein:vir:3743 protein:vir:3780	F108 HP1 HP2	100 % 80 % 79 %
TermL	protein:vir:98854 protein:vir:3781 protein:vir:3744	F108 HP2 HP1	100 % 79 % 79 %
Ad1	protein:vir:98858 protein:vir:3785 protein:vir:3748	F108 HP2 HP1	100 % 68 % 67 %
Ne1	protein:vir:98860 protein:vir:3750 protein:vir:3787	F108 HP1 HP2	100 % 50 % 35 %
Tc1	protein:vir:98859 protein:vir:3786 protein:vir:3749	F108 HP2 HP1	100 % 66 % 56 %