Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi3626 | Genbank acc : NC_003524 | Aclame index mge :314

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:1383\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:1380\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:1379\|NCBI_annot:putative	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:1388\|NCBI_annot:major	Blast (e-value=1e-116)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:1384\|NCBI_annot:Gp7	HHsearch (proba=100.00%)
Hc1	8	lcl\|Aclame:protein:vir:1385\|NCBI_annot:Gp8	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:1386\|NCBI_annot:Gp9	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:1387\|NCBI_annot:Gp10	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1383 protein:vir:1268 protein:vir:102082	phi3626 phi-105 Fah	100 % 24 % 23 %
Portal	protein:vir:1380 protein:vir:102080 protein:vir:102855	phi3626 Fah Cherry	100 % 54 % 54 %
TermL	protein:vir:1379 protein:vir:81178 protein:vir:102079	phi3626 Geobacillus virus E2 Fah	100 % 42 % 41 %
MTP	protein:vir:1388 protein:vir:102037 protein:vir:102845	phi3626 Fah Cherry	100 % 31 % 31 %
Ad1	protein:vir:1384 protein:vir:102158 protein:vir:81159	phi3626 phiSM101 Geobacillus virus E2	100 % 38 % 37 %
Hc1	protein:vir:1385 protein:vir:102144 protein:vir:81177	phi3626 phiSM101 Geobacillus virus E2	100 % 30 % 25 %
Ne1	protein:vir:1386 protein:vir:1273 protein:vir:102085	phi3626 phi-105 Fah	100 % 30 % 26 %
Tc1	protein:vir:1387 protein:vir:93902 protein:vir:78648	phi3626 3A tp310-2	100 % 27 % 26 %