Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiO18P | Genbank acc : NC_009542 | Aclame index mge :1857

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 45

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	23	lcl\|Aclame:protein:vir:78777\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	19	lcl\|Aclame:protein:vir:78749\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	21	lcl\|Aclame:protein:vir:78781\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	28	lcl\|Aclame:protein:vir:78782\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad1	25	lcl\|Aclame:protein:vir:78780\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	27	lcl\|Aclame:protein:vir:78755\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	26	lcl\|Aclame:protein:vir:78779\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78777 protein:vir:270 protein:vir:79157	phiO18P K139 RSA1	100 % 48 % 29 %
Portal	protein:vir:78749 protein:vir:98853 protein:vir:3743	phiO18P F108 HP1	100 % 56 % 51 %
TermL	protein:vir:78781 protein:vir:268 protein:vir:98854	phiO18P K139 F108	100 % 57 % 49 %
Sheath	protein:vir:78782 protein:vir:3788 protein:vir:3751	phiO18P HP2 HP1	100 % 52 % 52 %
Ad1	protein:vir:78780 protein:vir:272 protein:vir:3785	phiO18P K139 HP2	100 % 44 % 35 %
Ne1	protein:vir:78755 protein:vir:5703 protein:vir:2026	phiO18P L-413C P2	100 % 31 % 30 %
Tc1	protein:vir:78779 protein:vir:273 protein:vir:3749	phiO18P K139 HP1	100 % 38 % 31 %