Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : DMS3 | Genbank acc : NC_008717 | Aclame index mge :1649

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 8) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 52

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|Aclame:protein:vir:99228\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	27	lcl\|Aclame:protein:vir:99232\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	26	lcl\|Aclame:protein:vir:99234\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	39	lcl\|Aclame:protein:vir:99223\|NCBI_annot:hypothetical	Blast (e-value=1e-148)
Sheath	NOT FOUND
Ad1	36	lcl\|Aclame:protein:vir:99222\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	29	lcl\|Aclame:protein:vir:99196\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	37	lcl\|Aclame:protein:vir:99226\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Ad1	7	3
Ne1<->Tc1	8	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:99228 protein:vir:79246 protein:vir:1991	DMS3 Phage MP22 Mu	100 % 98 % 49 %
Portal	protein:vir:99232 protein:vir:79233 protein:vir:103860	DMS3 Phage MP22 D3112	100 % 99 % 78 %
TermL	protein:vir:99234 protein:vir:103868 protein:vir:79222	DMS3 D3112 Phage MP22	100 % 97 % 36 %
MTP	protein:vir:99223 protein:vir:103876 protein:vir:79254	DMS3 D3112 Phage MP22	100 % 96 % 56 %
Ad1	protein:vir:79253 protein:vir:99222 protein:vir:103846	Phage MP22 DMS3 D3112	100 % 100 % 67 %
Ne1	protein:vir:99196 protein:vir:79225 protein:vir:103841	DMS3 Phage MP22 D3112	100 % 98 % 72 %
Tc1	protein:vir:99226 protein:vir:79247 protein:vir:103883	DMS3 Phage MP22 D3112	100 % 99 % 71 %