Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 39 lcl|Aclame:protein:vir:99888|NCBI_annot:capsid HHsearch (proba=100.00%)
Portal 32 lcl|Aclame:protein:vir:99853|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 31 lcl|Aclame:protein:vir:99847|NCBI_annot:large Blast (e-value=0)
MTP 44 lcl|Aclame:protein:vir:99839|NCBI_annot:hypothetical Blast (e-value=1e-146)
Sheath NOT FOUND
Ad1 41 lcl|Aclame:protein:vir:99848|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 35 lcl|Aclame:protein:vir:99833|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 42 lcl|Aclame:protein:vir:99874|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ne1<->Ad1 6 3
Ne1<->Tc1 7 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99888
protein:vir:79078
protein:vir:107882
B3
phiE255
BcepMu
100 %
25 %
25 %
Portal protein:vir:99853
protein:vir:79063
protein:vir:107880
B3
phiE255
BcepMu
100 %
26 %
26 %
TermL protein:vir:99847
protein:vir:107886
protein:vir:79096
B3
BcepMu
phiE255
100 %
30 %
30 %
MTP protein:vir:99839
protein:vir:103876
protein:vir:99223
B3
D3112
DMS3
100 %
38 %
36 %
Ad1 protein:vir:99848
protein:vir:103846
protein:vir:1993
B3
D3112
Mu
100 %
28 %
27 %
Ne1 protein:vir:99833
protein:vir:103841
protein:vir:79225
B3
D3112
Phage MP22
100 %
30 %
28 %
Tc1 protein:vir:99874
protein:vir:4461
protein:vir:488
B3
ST64B
P27
100 %
27 %
26 %