Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi-105 | Genbank acc : NC_004167 | Aclame index mge :329

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 51

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:1268\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Portal	5	lcl\|Aclame:protein:vir:1266\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:1263\|NCBI_annot:hypothetical	Blast (e-value=0)
MTP	14	lcl\|Aclame:protein:vir:1275\|NCBI_annot:hypothetical	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	10	lcl\|Aclame:protein:vir:1271\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	11	lcl\|Aclame:protein:vir:1272\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	12	lcl\|Aclame:protein:vir:1273\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	13	lcl\|Aclame:protein:vir:1274\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:1268 protein:vir:102082 protein:vir:102873	phi-105 Fah Cherry	100 % 47 % 47 %
Portal	protein:vir:1266 protein:vir:102118 protein:vir:102855	phi-105 phiSM101 Cherry	100 % 34 % 30 %
TermL	protein:vir:1263 protein:vir:81178 protein:vir:102079	phi-105 Geobacillus virus E2 Fah	100 % 62 % 61 %
MTP	protein:vir:1275 protein:vir:9710 protein:vir:95370	phi-105 315.2 GBSV1	100 % 28 % 28 %
Ad1	protein:vir:1271 protein:vir:1384 protein:vir:102158	phi-105 phi3626 phiSM101	100 % 33 % 27 %
Hc1	protein:vir:1272 protein:vir:1890 protein:vir:102084	phi-105 HK022 Fah	100 % 31 % 28 %
Ne1	protein:vir:1273 protein:vir:102085 protein:vir:102875	phi-105 Fah Cherry	100 % 37 % 37 %
Tc1	protein:vir:1274 protein:vir:102086 protein:vir:102888	phi-105 Fah Cherry	100 % 31 % 31 %