Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Geobacillus virus E2 | Genbank acc : NC_009552 | Aclame index mge :1892

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 71

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:81160\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:81152\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:81178\|NCBI_annot:putative	Blast (e-value=0)
MTP	13	lcl\|Aclame:protein:vir:81151\|NCBI_annot:putative	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:81159\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:81177\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	11	lcl\|Aclame:protein:vir:81147\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	12	lcl\|Aclame:protein:vir:81158\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:81160 protein:vir:102082 protein:vir:102873	Geobacillus virus E2 Fah Cherry	100 % 42 % 42 %
Portal	protein:vir:81152 protein:vir:102118 protein:vir:102855	Geobacillus virus E2 phiSM101 Cherry	100 % 42 % 42 %
TermL	protein:vir:81178 protein:vir:1263 protein:vir:102079	Geobacillus virus E2 phi-105 Fah	100 % 62 % 55 %
MTP	protein:vir:81151 protein:vir:95370 protein:vir:80149	Geobacillus virus E2 GBSV1 bacteriophage bv1	100 % 43 % 42 %
Ad1	protein:vir:81159 protein:vir:102083 protein:vir:102863	Geobacillus virus E2 Fah Cherry	100 % 54 % 54 %
Hc1	protein:vir:81177 protein:vir:1890 protein:vir:4343	Geobacillus virus E2 HK022 D3	100 % 34 % 28 %
Ne1	protein:vir:81147 protein:vir:80116 protein:vir:95372	Geobacillus virus E2 bacteriophage bv1 GBSV1	100 % 39 % 35 %
Tc1	protein:vir:81158 protein:vir:95371 protein:vir:80109	Geobacillus virus E2 GBSV1 bacteriophage bv1	100 % 47 % 46 %