Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Che12 | Genbank acc : NC_008203 | Aclame index mge :1656

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 98

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	14	lcl\|Aclame:protein:vir:104085\|NCBI_annot:gp17\|genbank:acc:YP_655596;genbank:gi:109392467;genbank:Gen	HHsearch (proba=100.00%)
Portal	11	lcl\|Aclame:protein:vir:104082\|NCBI_annot:gp14\|genbank:acc:YP_655593;genbank:gi:109392464;genbank:Gen	HHsearch (proba=100.00%)
TermL	10	lcl\|Aclame:protein:vir:104081\|NCBI_annot:gp13\|genbank:acc:YP_655592;genbank:gi:109392463;genbank:Gen	Blast (e-value=0)
MTP	22	lcl\|Aclame:protein:vir:104093\|NCBI_annot:gp25\|genbank:acc:YP_655604;genbank:gi:109392475;genbank:Gen	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	17	lcl\|Aclame:protein:vir:104088\|NCBI_annot:gp20\|genbank:acc:YP_655599;genbank:gi:109392470;genbank:Gen	HHsearch (proba=100.00%)
Hc1	19	lcl\|Aclame:protein:vir:104090\|NCBI_annot:gp22\|genbank:acc:YP_655601;genbank:gi:109392472;genbank:Gen	HHsearch (proba=100.00%)
Ne1	20	lcl\|Aclame:protein:vir:104091\|NCBI_annot:gp23\|genbank:acc:YP_655602;genbank:gi:109392473;genbank:Gen	HHsearch (proba=100.00%)
Tc1	21	lcl\|Aclame:protein:vir:104092\|NCBI_annot:gp24\|genbank:acc:YP_655603;genbank:gi:109392474;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104085 protein:vir:2430 protein:vir:4226	Che12 D29 L5	100 % 85 % 84 %
Portal	protein:vir:104082 protein:vir:2427 protein:vir:4223	Che12 D29 L5	100 % 92 % 88 %
TermL	protein:vir:104081 protein:vir:4222 protein:vir:2426	Che12 L5 D29	100 % 90 % 88 %
MTP	protein:vir:104093 protein:vir:4232 protein:vir:2437	Che12 L5 D29	100 % 93 % 87 %
Ad1	protein:vir:104088 protein:vir:2432 protein:vir:4228	Che12 D29 L5	100 % 83 % 82 %
Hc1	protein:vir:104090 protein:vir:4229 protein:vir:2434	Che12 L5 D29	100 % 93 % 87 %
Ne1	protein:vir:104091 protein:vir:2435 protein:vir:4230	Che12 D29 L5	100 % 66 % 64 %
Tc1	protein:vir:104092 protein:vir:2436 protein:vir:4231	Che12 D29 L5	100 % 79 % 78 %