BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_015263.1_cdsid_YP_004306296.1 [gene=LaPh949_gp136] [protein=putative phage structural protein] [protein_id=YP_004306296.1] [location=complement(98334..99038)] (234 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|20536|lcl|protein:vir:105144 Length: 254 # NCBI annotation: h... 92 5e-21 gi|26450|lcl|protein:vir:562 Length: 265 # NCBI annotation: unkn... 40 3e-05 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 25 1.2 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 25 1.2 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 23 4.1 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 23 4.3 >gi|20536|lcl|protein:vir:105144 Length: 254 # NCBI annotation: hypothetical protein # Family: family:all:27346 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398587;genbank:gi:80159843;genbank:GeneID :3772982 Length = 254 Score = 92.0 bits (227), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 25/252 (9%) Query: 5 GIKEVADVIFFDIATGKPVLFFDTLKTSSIENASETTDATGGRGNAKLMTWNYSRTATLQ 64 GIK+ A++ + + KP L+ D +S+ N +T+ + K + W++ + +TL+ Sbjct: 6 GIKDSANITILEKVSKKPFLYADY--ATSVSNNWKTSQVYAKSKSTKAIRWDFGKESTLK 63 Query: 65 MQDALLSLESMAVLAGTEVVAG-TTLYKREKL-AVKTNTATLS-ETPSESTKVTIVDKDG 121 M + + +++LAG+E G L+KRE L A N+ TLS E S V ++ +DG Sbjct: 64 MHLEIFDMRFISMLAGSEFKKGKQNLFKREVLVADNKNSITLSHEAKVGSLSVHLLQEDG 123 Query: 122 ----KEVSAARVSGTSVTGLDGQ---------------TTVSAYYEYKAPSSAKTVKFVS 162 E+ S + +D T + YY +A+T+ + Sbjct: 124 LTNGDEIKLGDNSSSGNYKVDTSESKKLLLNTTQCPEGTKIVVYYMTNTEETAQTMTISA 183 Query: 163 DKFPGAYRVIGDTIVRDNATGKDRVAQFMIPKAQLQAGFTFTMDAENVSTFDFNLDILRD 222 DKFP AY + DT++RD +D+ Q + + FT TM A +++ + D+L+D Sbjct: 184 DKFPKAYTIYMDTMIRD-TDQQDKFVQVHYLNVKPKGNFTLTMSASDITKLEIEFDVLKD 242 Query: 223 GESTDLYSITIV 234 S D+ + TI+ Sbjct: 243 SGSEDMMTYTII 254 >gi|26450|lcl|protein:vir:562 Length: 265 # NCBI annotation: unknown # Family: family:all:6593 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046597;genbank:gi:9630170;genbank:GeneID: 1261356 Length = 265 Score = 40.0 bits (92), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 8/183 (4%) Query: 45 GGRGNAKLMTWNYSRTATLQMQDALLSLESMAVLAGTEVVAGT-TLYKREKLAVK-TNTA 102 GG GN L N S+ + +++A L+ MA+ G ++ T ++++ E L V T T Sbjct: 45 GGWGNRDLYVINSSKEVSGNVRNAFFDLDFMAMQQGVKIENETISVWEDESLTVSDTGTV 104 Query: 103 TLSETPSESTKVTIVDKDGKEVSAARVSGTSVTGLDGQTT--VSAYYEYKAPSSAKTVKF 160 LS P +KV++ ++DG ++ S T VT D T + Y+ A+TV+ Sbjct: 105 ILSYLPL--SKVSLTNEDGDQIEVDAASKT-VTVPDTFATKGEALAVHYQIEVEAETVEI 161 Query: 161 VSDKFPGAYRVIGDTIVRDNATGKDRVAQFM-IPKAQLQAGFTFTMDAENVSTFDFNLDI 219 +KF Y TI D T K ++ +PK + +A N T + Sbjct: 162 NGEKFSENYYFEIHTIEYDPKTSKIYSDLYIQLPKVNFSGEADMSFEAGNAYTPEIGYRA 221 Query: 220 LRD 222 L D Sbjct: 222 LAD 224 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 24.6 bits (52), Expect = 1.2, Method: Compositional matrix adjust. Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 90 YKREKLAVKTNTATLSETPSESTKVTIVDKDGKEVSAARVS 130 YK ++ + TN E P K +DK G+ +S R++ Sbjct: 145 YKGARILIDTN----PENPMHPVKKDYIDKSGQRLSNGRLN 181 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 24.6 bits (52), Expect = 1.2, Method: Compositional matrix adjust. Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 90 YKREKLAVKTNTATLSETPSESTKVTIVDKDGKEVSAARVS 130 YK ++ + TN E P K +DK G+ +S R++ Sbjct: 143 YKGARILIDTN----PENPMHPVKKDYIDKSGQRLSNGRLN 179 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 22.7 bits (47), Expect = 4.1, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 90 YKREKLAVKTNTATLSETPSESTKVTIVDKDGKEVSAARVS 130 +K ++ + TN E P K +DK G+ +S R++ Sbjct: 142 HKGARILIDTN----PENPMHPVKKDYIDKSGQRLSNGRLN 178 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 22.7 bits (47), Expect = 4.3, Method: Compositional matrix adjust. Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%) Query: 90 YKREKLAVKTNTATLSETPSESTKVTIVDKDGKEVSAARVS 130 +K ++ + TN E P K +DK G+ +S R++ Sbjct: 142 HKGARILIDTN----PENPMHPVKKDYIDKSGQRLSNGRLN 178 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.313 0.128 0.344 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,811 Number of Sequences: 514 Number of extensions: 3769 Number of successful extensions: 11 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 4 Number of HSP's gapped (non-prelim): 8 length of query: 234 length of database: 206,069 effective HSP length: 69 effective length of query: 165 effective length of database: 170,603 effective search space: 28149495 effective search space used: 28149495 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 36 (18.5 bits)