Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PhiNIH1.1 | Genbank acc : NC_003157 | Aclame index mge :61

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|Aclame:protein:vir:3033\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	28	lcl\|Aclame:protein:vir:3028\|NCBI_annot:minor	HHsearch (proba=100.00%)
TermL	27	lcl\|Aclame:protein:vir:3027\|NCBI_annot:terminase	Blast (e-value=0)
MTP	38	lcl\|Aclame:protein:vir:3038\|NCBI_annot:tail	Blast (e-value=3e-92)
Sheath	NOT FOUND
Ad1	34	lcl\|Aclame:protein:vir:3034\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	35	lcl\|Aclame:protein:vir:3035\|NCBI_annot:minor	HHsearch (proba=100.00%)
Ne1	36	lcl\|Aclame:protein:vir:3036\|NCBI_annot:minor	HHsearch (proba=100.00%)
Tc1	37	lcl\|Aclame:protein:vir:3037\|NCBI_annot:minor	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9820 protein:vir:3033 protein:vir:3613	315.4 PhiNIH1.1 TP901-1	100 % 100 % 51 %
Portal	protein:vir:9815 protein:vir:3028 protein:vir:4782	315.4 PhiNIH1.1 MM1	100 % 100 % 62 %
TermL	protein:vir:9814 protein:vir:3027 protein:vir:78869	315.4 PhiNIH1.1 A006	100 % 100 % 58 %
MTP	protein:vir:9825 protein:vir:3038 protein:vir:4792	315.4 PhiNIH1.1 MM1	100 % 100 % 71 %
Ad1	protein:vir:9821 protein:vir:3034 protein:vir:4788	315.4 PhiNIH1.1 MM1	100 % 100 % 48 %
Hc1	protein:vir:9822 protein:vir:3035 protein:vir:4789	315.4 PhiNIH1.1 MM1	100 % 100 % 44 %
Ne1	protein:vir:9823 protein:vir:3036 protein:vir:98892	315.4 PhiNIH1.1 BCJA1c	100 % 100 % 42 %
Tc1	protein:vir:9824 protein:vir:3037 protein:vir:4791	315.4 PhiNIH1.1 MM1	100 % 100 % 44 %