Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P27 | Genbank acc : NC_003356 | Aclame index mge :11

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	40	lcl\|Aclame:protein:vir:485\|NCBI_annot:putative	HHsearch (proba=100.00%)
Portal	38	lcl\|Aclame:protein:vir:483\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	36	lcl\|Aclame:protein:vir:481\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	44	lcl\|Aclame:protein:vir:489\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad1	41	lcl\|Aclame:protein:vir:486\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	42	lcl\|Aclame:protein:vir:487\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	43	lcl\|Aclame:protein:vir:488\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:485 protein:vir:4456 protein:vir:100247	P27 ST64B Bcep176	100 % 89 % 40 %
Portal	protein:vir:483 protein:vir:4454 protein:vir:105064	P27 ST64B phiKO2	100 % 88 % 34 %
TermL	protein:vir:481 protein:vir:4452 protein:vir:4508	P27 ST64B V	100 % 78 % 75 %
Sheath	protein:vir:489 protein:vir:4517 protein:vir:4463	P27 V ST64B	100 % 83 % 79 %
Ad1	protein:vir:486 protein:vir:4458 protein:vir:4512	P27 ST64B V	100 % 68 % 64 %
Ne1	protein:vir:487 protein:vir:4460 protein:vir:4514	P27 ST64B V	100 % 68 % 62 %
Tc1	protein:vir:488 protein:vir:4461 protein:vir:4515	P27 ST64B V	100 % 82 % 68 %