Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 40 lcl|Aclame:protein:vir:485|NCBI_annot:putative HHsearch (proba=100.00%)
Portal 38 lcl|Aclame:protein:vir:483|NCBI_annot:putative HHsearch (proba=100.00%)
TermL 36 lcl|Aclame:protein:vir:481|NCBI_annot:putative Blast (e-value=0)
MTP NOT FOUND
Sheath 44 lcl|Aclame:protein:vir:489|NCBI_annot:putative HHsearch (proba=100.00%)
Ad1 41 lcl|Aclame:protein:vir:486|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 42 lcl|Aclame:protein:vir:487|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 43 lcl|Aclame:protein:vir:488|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:485
protein:vir:4456
protein:vir:100247
P27
ST64B
Bcep176
100 %
89 %
40 %
Portal protein:vir:483
protein:vir:4454
protein:vir:105064
P27
ST64B
phiKO2
100 %
88 %
34 %
TermL protein:vir:481
protein:vir:4452
protein:vir:4508
P27
ST64B
V
100 %
78 %
75 %
Sheath protein:vir:489
protein:vir:4517
protein:vir:4463
P27
V
ST64B
100 %
83 %
79 %
Ad1 protein:vir:486
protein:vir:4458
protein:vir:4512
P27
ST64B
V
100 %
68 %
64 %
Ne1 protein:vir:487
protein:vir:4460
protein:vir:4514
P27
ST64B
V
100 %
68 %
62 %
Tc1 protein:vir:488
protein:vir:4461
protein:vir:4515
P27
ST64B
V
100 %
82 %
68 %