Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 18 lcl|Aclame:protein:vir:3783|NCBI_annot:capsid|genbank:acc:NP_536823;genbank:gi:17981832;genbank:Gene HHsearch (proba=100.00%)
Portal 15 lcl|Aclame:protein:vir:3780|NCBI_annot:orf15|genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneI HHsearch (proba=100.00%)
TermL 16 lcl|Aclame:protein:vir:3781|NCBI_annot:terminase|genbank:acc:NP_536821;genbank:gi:17981830;genbank:G Blast (e-value=0)
MTP NOT FOUND
Sheath 23 lcl|Aclame:protein:vir:3788|NCBI_annot:tail HHsearch (proba=100.00%)
Ad1 20 lcl|Aclame:protein:vir:3785|NCBI_annot:packaging HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 22 lcl|Aclame:protein:vir:3787|NCBI_annot:orf22|genbank:acc:NP_536827;genbank:gi:17981836;genbank:GeneI HHsearch (proba=100.00%)
Tc1 21 lcl|Aclame:protein:vir:3786|NCBI_annot:orf21|genbank:acc:NP_536826;genbank:gi:17981835;genbank:GeneI HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3783
protein:vir:3746
protein:vir:98856
HP2
HP1
F108
100 %
96 %
43 %
Portal protein:vir:3780
protein:vir:3743
protein:vir:98853
HP2
HP1
F108
100 %
98 %
79 %
TermL protein:vir:3781
protein:vir:3744
protein:vir:98854
HP2
HP1
F108
100 %
96 %
79 %
Sheath protein:vir:3788
protein:vir:3751
protein:vir:98861
HP2
HP1
F108
100 %
99 %
72 %
Ad1 protein:vir:3785
protein:vir:3748
protein:vir:98858
HP2
HP1
F108
100 %
91 %
68 %
Ne1 protein:vir:3787
protein:vir:3750
protein:vir:98860
HP2
HP1
F108
100 %
41 %
35 %
Tc1 protein:vir:3786
protein:vir:98859
protein:vir:3749
HP2
F108
HP1
100 %
67 %
63 %