Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : HP2 | Genbank acc : NC_003315 | Aclame index mge :328

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 37

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	18	lcl\|Aclame:protein:vir:3783\|NCBI_annot:capsid\|genbank:acc:NP_536823;genbank:gi:17981832;genbank:Gene	HHsearch (proba=100.00%)
Portal	15	lcl\|Aclame:protein:vir:3780\|NCBI_annot:orf15\|genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneI	HHsearch (proba=100.00%)
TermL	16	lcl\|Aclame:protein:vir:3781\|NCBI_annot:terminase\|genbank:acc:NP_536821;genbank:gi:17981830;genbank:G	Blast (e-value=0)
MTP	NOT FOUND
Sheath	23	lcl\|Aclame:protein:vir:3788\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad1	20	lcl\|Aclame:protein:vir:3785\|NCBI_annot:packaging	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	22	lcl\|Aclame:protein:vir:3787\|NCBI_annot:orf22\|genbank:acc:NP_536827;genbank:gi:17981836;genbank:GeneI	HHsearch (proba=100.00%)
Tc1	21	lcl\|Aclame:protein:vir:3786\|NCBI_annot:orf21\|genbank:acc:NP_536826;genbank:gi:17981835;genbank:GeneI	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3783 protein:vir:3746 protein:vir:98856	HP2 HP1 F108	100 % 96 % 43 %
Portal	protein:vir:3780 protein:vir:3743 protein:vir:98853	HP2 HP1 F108	100 % 98 % 79 %
TermL	protein:vir:3781 protein:vir:3744 protein:vir:98854	HP2 HP1 F108	100 % 96 % 79 %
Sheath	protein:vir:3788 protein:vir:3751 protein:vir:98861	HP2 HP1 F108	100 % 99 % 72 %
Ad1	protein:vir:3785 protein:vir:3748 protein:vir:98858	HP2 HP1 F108	100 % 91 % 68 %
Ne1	protein:vir:3787 protein:vir:3750 protein:vir:98860	HP2 HP1 F108	100 % 41 % 35 %
Tc1	protein:vir:3786 protein:vir:98859 protein:vir:3749	HP2 F108 HP1	100 % 67 % 63 %