Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : c5 | Genbank acc : NC_019449

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|NC_019449.1_cdsid_YP_007002345.1	HHsearch (proba=100.00%)
Portal	6	lcl\|NC_019449.1_cdsid_YP_007002343.1	HHsearch (proba=100.00%)
TermL	5	lcl\|NC_019449.1_cdsid_YP_007002342.1	Blast (e-value=2e-42)
MTP	14	lcl\|NC_019449.1_cdsid_YP_007002351.1	Blast (e-value=3e-06)
Sheath	NOT FOUND
Ad1	10	lcl\|NC_019449.1_cdsid_YP_007002347.1	HHsearch (proba=99.93%)
Hc1	11	lcl\|NC_019449.1_cdsid_YP_007002348.1	HHsearch (proba=100.00%)
Ne1	12	lcl\|NC_019449.1_cdsid_YP_007002349.1	HHsearch (proba=97.60%)
Tc1	13	lcl\|NC_019449.1_cdsid_YP_007002350.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4456 protein:vir:485 protein:vir:6212	ST64B P27 phBC6A52	20 % 20 % 20 %
Portal	protein:vir:105064 protein:vir:5737 protein:vir:102080	phiKO2 PY54 Fah	23 % 22 % 21 %
TermL	protein:vir:81178 protein:vir:78630 protein:vir:94427	Geobacillus virus E2 tp310-2 47	26 % 25 % 25 %
MTP	protein:vir:102037 protein:vir:102845 protein:vir:107619	Fah Cherry Gamma	23 % 23 % 23 %
Ad1	protein:vir:1271 protein:vir:81159 protein:vir:102083	phi-105 Geobacillus virus E2 Fah	26 % 23 % 22 %
Hc1	protein:vir:100134 protein:vir:81177 protein:vir:105035	phi1026b Geobacillus virus E2 phiKO2	25 % 25 % 24 %
Ne1	protein:vir:100243 protein:vir:80362 protein:vir:1273	Bcep176 phi644-2 phi-105	22 % 23 % 23 %
Tc1	protein:vir:1387 protein:vir:102086 protein:vir:102888	phi3626 Fah Cherry	28 % 22 % 22 %