Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi1026b | Genbank acc : NC_005284 | Aclame index mge :1639

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 83

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:100135\|NCBI_annot:gp5\|genbank:acc:NP_945035;genbank:gi:38707895;genbank:GeneI	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:100150\|NCBI_annot:gp3\|genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneI	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:100097\|NCBI_annot:gp2\|genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneI	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:100083\|NCBI_annot:gp11\|genbank:acc:NP_945041;genbank:gi:38707901;genbank:Gene	Blast (e-value=1e-86)
Sheath	NOT FOUND
Ad1	7	lcl\|Aclame:protein:vir:100103\|NCBI_annot:gp7\|genbank:acc:NP_945037;genbank:gi:38707897;genbank:GeneI	HHsearch (proba=100.00%)
Hc1	8	lcl\|Aclame:protein:vir:100134\|NCBI_annot:gp8\|genbank:acc:NP_945038;genbank:gi:38707898;genbank:GeneI	HHsearch (proba=100.00%)
Ne1	9	lcl\|Aclame:protein:vir:100075\|NCBI_annot:gp9\|genbank:acc:NP_945039;genbank:gi:38707899;genbank:GeneI	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:100116\|NCBI_annot:gp10\|genbank:acc:NP_945040;genbank:gi:38707900;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100135 protein:vir:4339 protein:vir:97053	phi1026b D3 OP1	100 % 60 % 43 %
Portal	protein:vir:100150 protein:vir:4337 protein:vir:81072	phi1026b D3 Xop411	100 % 46 % 39 %
TermL	protein:vir:100097 protein:vir:1429 protein:vir:80335	phi1026b phiE125 phi644-2	100 % 95 % 85 %
MTP	protein:vir:100083 protein:vir:1439 protein:vir:100241	phi1026b phiE125 Bcep176	100 % 98 % 80 %
Ad1	protein:vir:100103 protein:vir:100245 protein:vir:10365	phi1026b Bcep176 Xp10	100 % 46 % 34 %
Hc1	protein:vir:100134 protein:vir:100244 protein:vir:1436	phi1026b Bcep176 phiE125	100 % 71 % 64 %
Ne1	protein:vir:100075 protein:vir:1437 protein:vir:80362	phi1026b phiE125 phi644-2	100 % 99 % 96 %
Tc1	protein:vir:100116 protein:vir:1438 protein:vir:80371	phi1026b phiE125 phi644-2	100 % 99 % 96 %