Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PY54 | Genbank acc : NC_005069 | Aclame index mge :122

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 66

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:5739\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:5737\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:5736\|NCBI_annot:terminase	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:5746\|NCBI_annot:hypothetical	Blast (e-value=1e-85)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:5742\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:5743\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	11	lcl\|Aclame:protein:vir:5745\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:5744\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5739 protein:vir:105038 protein:vir:80376	PY54 phiKO2 phi644-2	100 % 76 % 48 %
Portal	protein:vir:5737 protein:vir:105064 protein:vir:80333	PY54 phiKO2 phi644-2	100 % 72 % 46 %
TermL	protein:vir:5736 protein:vir:105086 protein:vir:481	PY54 phiKO2 P27	100 % 72 % 55 %
MTP	protein:vir:5746 protein:vir:105078 protein:vir:100241	PY54 phiKO2 Bcep176	100 % 69 % 20 %
Ad1	protein:vir:5742 protein:vir:105087 protein:vir:10365	PY54 phiKO2 Xp10	100 % 51 % 24 %
Hc1	protein:vir:5743 protein:vir:105035 protein:vir:4459	PY54 phiKO2 ST64B	100 % 58 % 22 %
Ne1	protein:vir:5745 protein:vir:105089 protein:vir:4347	PY54 phiKO2 D3	100 % 65 % 28 %
Tc1	protein:vir:5744 protein:vir:105055 protein:vir:93602	PY54 phiKO2 phi 4795	100 % 59 % 19 %