Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 6 lcl|Aclame:protein:vir:4456|NCBI_annot:Major HHsearch (proba=100.00%)
Portal 4 lcl|Aclame:protein:vir:4454|NCBI_annot:Portal HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:4452|NCBI_annot:Terminase Blast (e-value=0)
MTP NOT FOUND
Sheath 13 lcl|Aclame:protein:vir:4463|NCBI_annot:Tail HHsearch (proba=100.00%)
Ad1 8 lcl|Aclame:protein:vir:4458|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Hc1 9 lcl|Aclame:protein:vir:4459|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ne1 10 lcl|Aclame:protein:vir:4460|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 11 lcl|Aclame:protein:vir:4461|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4456
protein:vir:485
protein:vir:100247
ST64B
P27
Bcep176
100 %
88 %
38 %
Portal protein:vir:4454
protein:vir:483
protein:vir:105064
ST64B
P27
phiKO2
100 %
89 %
34 %
TermL protein:vir:4452
protein:vir:4508
protein:vir:481
ST64B
V
P27
100 %
88 %
78 %
Sheath protein:vir:4463
protein:vir:4517
protein:vir:489
ST64B
V
P27
100 %
85 %
79 %
Ad1 protein:vir:4458
protein:vir:486
protein:vir:4512
ST64B
P27
V
100 %
68 %
59 %
Hc1 protein:vir:4459
protein:vir:4513
protein:vir:1890
ST64B
V
HK022
100 %
50 %
23 %
Ne1 protein:vir:4460
protein:vir:4514
protein:vir:487
ST64B
V
P27
100 %
73 %
63 %
Tc1 protein:vir:4461
protein:vir:488
protein:vir:4515
ST64B
P27
V
100 %
82 %
71 %