Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Bcep176 | Genbank acc : NC_007497 | Aclame index mge :1619

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 81

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	77	lcl\|Aclame:protein:vir:100247\|NCBI_annot:gp76\|genbank:acc:YP_355412;genbank:gi:77864702;genbank:Gene	HHsearch (proba=100.00%)
Portal	79	lcl\|Aclame:protein:vir:100249\|NCBI_annot:gp78\|genbank:acc:YP_355414;genbank:gi:77864704;genbank:Gene	HHsearch (proba=100.00%)
TermL	80	lcl\|Aclame:protein:vir:100250\|NCBI_annot:gp79\|genbank:acc:YP_355415;genbank:gi:77864705;genbank:Gene	Blast (e-value=0)
MTP	71	lcl\|Aclame:protein:vir:100241\|NCBI_annot:gp70\|genbank:acc:YP_355406;genbank:gi:77864696;genbank:Gene	Blast (e-value=3e-88)
Sheath	NOT FOUND
Ad1	75	lcl\|Aclame:protein:vir:100245\|NCBI_annot:gp74\|genbank:acc:YP_355410;genbank:gi:77864700;genbank:Gene	HHsearch (proba=100.00%)
Hc1	74	lcl\|Aclame:protein:vir:100244\|NCBI_annot:gp73\|genbank:acc:YP_355409;genbank:gi:77864699;genbank:Gene	HHsearch (proba=100.00%)
Ne1	73	lcl\|Aclame:protein:vir:100243\|NCBI_annot:gp72\|genbank:acc:YP_355408;genbank:gi:77864698;genbank:Gene	HHsearch (proba=100.00%)
Tc1	72	lcl\|Aclame:protein:vir:100242\|NCBI_annot:gp71\|genbank:acc:YP_355407;genbank:gi:77864697;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:100247 protein:vir:485 protein:vir:4456	Bcep176 P27 ST64B	100 % 41 % 38 %
Portal	protein:vir:100249 protein:vir:4454 protein:vir:483	Bcep176 ST64B P27	100 % 30 % 29 %
TermL	protein:vir:100250 protein:vir:93598 protein:vir:10361	Bcep176 phi 4795 Xp10	100 % 57 % 47 %
MTP	protein:vir:100241 protein:vir:100083 protein:vir:1439	Bcep176 phi1026b phiE125	100 % 80 % 80 %
Ad1	protein:vir:100245 protein:vir:100103 protein:vir:10365	Bcep176 phi1026b Xp10	100 % 46 % 30 %
Hc1	protein:vir:100244 protein:vir:100134 protein:vir:1436	Bcep176 phi1026b phiE125	100 % 71 % 62 %
Ne1	protein:vir:100243 protein:vir:100075 protein:vir:80362	Bcep176 phi1026b phi644-2	100 % 84 % 82 %
Tc1	protein:vir:100242 protein:vir:100116 protein:vir:1438	Bcep176 phi1026b phiE125	100 % 61 % 61 %