Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phBC6A52 | Genbank acc : NC_004821 | Aclame index mge :128

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 49

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	36	lcl\|Aclame:protein:vir:6212\|NCBI_annot:prohead	HHsearch (proba=100.00%)
Portal	34	lcl\|Aclame:protein:vir:6210\|NCBI_annot:Portal	HHsearch (proba=100.00%)
TermL	32	lcl\|Aclame:protein:vir:6208\|NCBI_annot:Terminase	Blast (e-value=0)
MTP	41	lcl\|Aclame:protein:vir:6217\|NCBI_annot:hypothetical	Blast (e-value=1e-123)
Sheath	NOT FOUND
Ad1	37	lcl\|Aclame:protein:vir:6213\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	38	lcl\|Aclame:protein:vir:6214\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	40	lcl\|Aclame:protein:vir:6216\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	39	lcl\|Aclame:protein:vir:6215\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:6212 protein:vir:1383 protein:vir:1433	phBC6A52 phi3626 phiE125	100 % 20 % 19 %
Portal	protein:vir:6210 protein:vir:102080 protein:vir:9702	phBC6A52 Fah 315.2	100 % 17 % 17 %
TermL	protein:vir:6208 protein:vir:80335 protein:vir:100097	phBC6A52 phi644-2 phi1026b	100 % 30 % 29 %
MTP	protein:vir:6217 protein:vir:95971 protein:vir:80149	phBC6A52 2638A bacteriophage bv1	100 % 18 % 17 %
Ad1	protein:vir:6213 protein:vir:4602 protein:vir:102083	phBC6A52 PVL Fah	100 % 23 % 26 %
Hc1	protein:vir:6214 protein:vir:100134 protein:vir:5977	phBC6A52 phi1026b SPP1	100 % 17 % 14 %
Ne1	protein:vir:6216 protein:vir:3873 protein:vir:9708	phBC6A52 A2 315.2	100 % 24 % 21 %
Tc1	protein:vir:6215 protein:vir:80109 protein:vir:95371	phBC6A52 bacteriophage bv1 GBSV1	100 % 26 % 24 %