Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 5 lcl|Aclame:protein:vir:94424|NCBI_annot:ORF010|genbank:acc:YP_240005;genbank:gi:66395666;genbank:Gen HHsearch (proba=100.00%)
Portal 3 lcl|Aclame:protein:vir:94426|NCBI_annot:ORF009|genbank:acc:YP_240003;genbank:gi:66395665;genbank:Gen HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:94427|NCBI_annot:ORF005|genbank:acc:YP_240002;genbank:gi:66395661;genbank:Gen Blast (e-value=0)
MTP 12 lcl|Aclame:protein:vir:94417|NCBI_annot:ORF018|genbank:acc:YP_240012;genbank:gi:66395674;genbank:Gen Blast (e-value=1e-124)
Sheath NOT FOUND
Ad1 7 lcl|Aclame:protein:vir:94422|NCBI_annot:ORF046|genbank:acc:YP_240007;genbank:gi:66395700;genbank:Gen HHsearch (proba=99.96%)
Hc1 9 lcl|Aclame:protein:vir:94420|NCBI_annot:ORF036|genbank:acc:YP_240009;genbank:gi:66395691;genbank:Gen HHsearch (proba=100.00%)
Ne1 10 lcl|Aclame:protein:vir:94419|NCBI_annot:ORF028|genbank:acc:YP_240010;genbank:gi:66395683;genbank:Gen HHsearch (proba=100.00%)
Tc1 11 lcl|Aclame:protein:vir:94418|NCBI_annot:ORF029|genbank:acc:YP_240011;genbank:gi:66395684;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:96978
protein:vir:94424
protein:vir:9361
42e
47
phi 12
100 %
100 %
100 %
Portal protein:vir:94426
protein:vir:93943
protein:vir:96980
47
3A
42e
100 %
100 %
99 %
TermL protein:vir:78630
protein:vir:94427
protein:vir:93883
tp310-2
47
3A
100 %
100 %
100 %
MTP protein:vir:78634
protein:vir:96971
protein:vir:94417
tp310-2
42e
47
100 %
100 %
100 %
Ad1 protein:vir:78636
protein:vir:96976
protein:vir:94422
tp310-2
42e
47
100 %
100 %
100 %
Hc1 protein:vir:78645
protein:vir:96974
protein:vir:94420
tp310-2
42e
47
100 %
100 %
100 %
Ne1 protein:vir:78644
protein:vir:96973
protein:vir:94419
tp310-2
42e
47
100 %
100 %
100 %
Tc1 protein:vir:94418
protein:vir:78648
protein:vir:96972
47
tp310-2
42e
100 %
99 %
99 %