Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiKO2 | Genbank acc : NC_005857 | Aclame index mge :1465

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 63

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:105038\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:105064\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:105086\|NCBI_annot:putative	Blast (e-value=0)
MTP	12	lcl\|Aclame:protein:vir:105078\|NCBI_annot:major	Blast (e-value=3e-88)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:105087\|NCBI_annot:Gp8\|genbank:acc:YP_006588;genbank:gi:46402094;genbank:GeneI	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:105035\|NCBI_annot:Gp9\|genbank:acc:YP_006589;genbank:gi:46402095;genbank:GeneI	HHsearch (proba=100.00%)
Ne1	11	lcl\|Aclame:protein:vir:105089\|NCBI_annot:Gp11\|genbank:acc:YP_006591;genbank:gi:46402097;genbank:Gene	HHsearch (proba=100.00%)
Tc1	10	lcl\|Aclame:protein:vir:105055\|NCBI_annot:Gp10\|genbank:acc:YP_006590;genbank:gi:46402096;genbank:Gene	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105038 protein:vir:5739 protein:vir:80376	phiKO2 PY54 phi644-2	100 % 76 % 48 %
Portal	protein:vir:105064 protein:vir:5737 protein:vir:80333	phiKO2 PY54 phi644-2	100 % 73 % 50 %
TermL	protein:vir:105086 protein:vir:5736 protein:vir:481	phiKO2 PY54 P27	100 % 72 % 56 %
MTP	protein:vir:105078 protein:vir:5746 protein:vir:106581	phiKO2 PY54 Lj965	100 % 69 % 21 %
Ad1	protein:vir:105087 protein:vir:5742 protein:vir:4512	phiKO2 PY54 V	100 % 52 % 28 %
Hc1	protein:vir:105035 protein:vir:5743 protein:vir:100134	phiKO2 PY54 phi1026b	100 % 58 % 21 %
Ne1	protein:vir:105089 protein:vir:5745 protein:vir:4347	phiKO2 PY54 D3	100 % 66 % 29 %
Tc1	protein:vir:105055 protein:vir:5744 protein:vir:93602	phiKO2 PY54 phi 4795	100 % 59 % 21 %