Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : tp310-2 | Genbank acc : NC_009762 | Aclame index mge :1855

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 66

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	48	lcl\|Aclame:protein:vir:78640\|NCBI_annot:phage	HHsearch (proba=100.00%)
Portal	46	lcl\|Aclame:protein:vir:78641\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	45	lcl\|Aclame:protein:vir:78630\|NCBI_annot:putative	Blast (e-value=0)
MTP	53	lcl\|Aclame:protein:vir:78634\|NCBI_annot:major	Blast (e-value=1e-124)
Sheath	NOT FOUND
Ad1	49	lcl\|Aclame:protein:vir:78636\|NCBI_annot:hypothetical	HHsearch (proba=99.96%)
Hc1	50	lcl\|Aclame:protein:vir:78645\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	51	lcl\|Aclame:protein:vir:78644\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	52	lcl\|Aclame:protein:vir:78648\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78640 protein:vir:96978 protein:vir:94424	tp310-2 42e 47	100 % 98 % 98 %
Portal	protein:vir:78641 protein:vir:94426 protein:vir:93943	tp310-2 47 3A	100 % 96 % 96 %
TermL	protein:vir:78630 protein:vir:94427 protein:vir:93883	tp310-2 47 3A	100 % 100 % 100 %
MTP	protein:vir:78634 protein:vir:96971 protein:vir:94417	tp310-2 42e 47	100 % 100 % 100 %
Ad1	protein:vir:78636 protein:vir:96976 protein:vir:94422	tp310-2 42e 47	100 % 100 % 100 %
Hc1	protein:vir:78645 protein:vir:96974 protein:vir:94420	tp310-2 42e 47	100 % 100 % 100 %
Ne1	protein:vir:78644 protein:vir:96973 protein:vir:94419	tp310-2 42e 47	100 % 100 % 100 %
Tc1	protein:vir:78648 protein:vir:96972 protein:vir:9364	tp310-2 42e phi 12	100 % 100 % 100 %