Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Gamma | Genbank acc : NC_007458 | Aclame index mge :1491

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|Aclame:protein:vir:107593\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:107605\|NCBI_annot:phage	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:107576\|NCBI_annot:phage	Blast (e-value=0)
MTP	10	lcl\|Aclame:protein:vir:107619\|NCBI_annot:major	Blast (e-value=1e-115)
Sheath	NOT FOUND
Ad1	6	lcl\|Aclame:protein:vir:107614\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Hc1	7	lcl\|Aclame:protein:vir:107606\|NCBI_annot:head-tail	HHsearch (proba=100.00%)
Ne1	8	lcl\|Aclame:protein:vir:107568\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Tc1	9	lcl\|Aclame:protein:vir:107581\|NCBI_annot:conserved	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102082 protein:vir:102873 protein:vir:107593	Fah Cherry Gamma	100 % 100 % 100 %
Portal	protein:vir:102855 protein:vir:107605 protein:vir:105002	Cherry Gamma W Beta	100 % 100 % 100 %
TermL	protein:vir:102079 protein:vir:102883 protein:vir:107576	Fah Cherry Gamma	100 % 100 % 100 %
MTP	protein:vir:102037 protein:vir:102845 protein:vir:107619	Fah Cherry Gamma	100 % 100 % 100 %
Ad1	protein:vir:102083 protein:vir:102863 protein:vir:107614	Fah Cherry Gamma	100 % 100 % 100 %
Hc1	protein:vir:102084 protein:vir:102856 protein:vir:107606	Fah Cherry Gamma	100 % 100 % 100 %
Ne1	protein:vir:102085 protein:vir:102875 protein:vir:107568	Fah Cherry Gamma	100 % 100 % 100 %
Tc1	protein:vir:102086 protein:vir:102888 protein:vir:107581	Fah Cherry Gamma	100 % 100 % 100 %