Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 7 lcl|NC_011398.1_cdsid_YP_002290883.1 HHsearch (proba=96.08%)
Portal 3 lcl|NC_011398.1_cdsid_YP_002290879.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_011398.1_cdsid_YP_002290878.1 Blast (e-value=1e-37)
MTP 14 lcl|NC_011398.1_cdsid_YP_002290890.1 Blast (e-value=1e-07)
Sheath 13 lcl|NC_011398.1_cdsid_YP_002290889.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 9 lcl|NC_011398.1_cdsid_YP_002290885.1 HHsearch (proba=96.44%)
Ne1 10 lcl|NC_011398.1_cdsid_YP_002290886.1 HHsearch (proba=100.00%)
Tc1 11 lcl|NC_011398.1_cdsid_YP_002290887.1 HHsearch (proba=97.67%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:97433
protein:vir:94494
protein:vir:9820
92
88
315.4
16 %
16 %
17 %
Portal protein:vir:3609
protein:vir:99072
protein:vir:7430
TP901-1
Wildcat
Barnyard
18 %
17 %
16 %
TermL protein:vir:106508
protein:vir:4950
protein:vir:101640
phiAsp2
Sfi19
11b
29 %
18 %
18 %
MTP protein:vir:79038
protein:vir:102360
protein:vir:105471
phiC2
phi CD119
KC5a
24 %
24 %
23 %
Sheath protein:vir:102957
protein:vir:78986
protein:vir:105470
EJ-1
phiC2
KC5a
24 %
21 %
19 %
Hc1 protein:vir:7447
protein:vir:102189
protein:vir:101507
Barnyard
PBI1
PLot
14 %
17 %
17 %
Ne1 protein:vir:94654
protein:vir:99101
protein:vir:8669
mu1/6
Qyrzula
Rosebush
30 %
24 %
24 %
Tc1 protein:vir:96260
protein:vir:105892
protein:vir:94096
ROSA
phiETA3
96
20 %
20 %
20 %