Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : mu1/6 | Genbank acc : NC_007967 | Aclame index mge :1527

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 52

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	36	lcl\|Aclame:protein:vir:94673\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	33	lcl\|Aclame:protein:vir:94666\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	32	lcl\|Aclame:protein:vir:94665\|NCBI_annot:terminase	Blast (e-value=0)
MTP	42	lcl\|Aclame:protein:vir:94649\|NCBI_annot:hypothetical	Blast (e-value=1e-108)
Sheath	NOT FOUND
Ad1	38	lcl\|Aclame:protein:vir:94688\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	39	lcl\|Aclame:protein:vir:94654\|NCBI_annot:tail	HHsearch (proba=100.00%)
Tc1	40	lcl\|Aclame:protein:vir:94644\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94673 protein:vir:4339 protein:vir:97053	mu1/6 D3 OP1	100 % 29 % 29 %
Portal	protein:vir:94666 protein:vir:1326 protein:vir:81072	mu1/6 phi-C31 Xop411	100 % 19 % 19 %
TermL	protein:vir:94665 protein:vir:106049 protein:vir:99083	mu1/6 Cooper Qyrzula	100 % 19 % 17 %
MTP	protein:vir:94649 protein:vir:7453 protein:vir:81151	mu1/6 Barnyard Geobacillus virus E2	100 % 25 % 20 %
Ad1	protein:vir:94688 protein:vir:1435 protein:vir:81255	mu1/6 phiE125 BFK20	100 % 17 % 22 %
Ne1	protein:vir:94654 protein:vir:99101 protein:vir:8669	mu1/6 Qyrzula Rosebush	100 % 30 % 30 %
Tc1	protein:vir:94644 protein:vir:96894	mu1/6 EW	100 % 14 %