Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiAsp2 | Genbank acc : NC_005885 | Aclame index mge :1680

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 76

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	NOT FOUND
Portal	4	lcl\|Aclame:protein:vir:106491\|NCBI_annot:Pas4\|genbank:acc:YP_024790;genbank:gi:48697405;genbank:Gene	HHsearch (proba=100.00%)
TermL	60	lcl\|Aclame:protein:vir:106508\|NCBI_annot:Pas60\|genbank:acc:YP_024846;genbank:gi:48697461;genbank:Gen	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	19	lcl\|Aclame:protein:vir:106490\|NCBI_annot:Pas19\|genbank:acc:YP_024805;genbank:gi:48697420;genbank:Gen	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	21	lcl\|Aclame:protein:vir:106506\|NCBI_annot:Pas21\|genbank:acc:YP_024807;genbank:gi:48697422;genbank:Gen	HHsearch (proba=100.00%)
Tc1	20	lcl\|Aclame:protein:vir:106489\|NCBI_annot:Pas20\|genbank:acc:YP_024806;genbank:gi:48697421;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
Portal	protein:vir:106491 protein:vir:102426 protein:vir:106027	phiAsp2 Pipefish Cooper	100 % 28 % 28 %
TermL	protein:vir:106508 protein:vir:99847 protein:vir:79128	phiAsp2 B3 RSA1	100 % 17 % 17 %
Ad1	protein:vir:106490 protein:vir:99098 protein:vir:8666	phiAsp2 Qyrzula Rosebush	100 % 37 % 37 %
Ne1	protein:vir:106506 protein:vir:99101 protein:vir:8669	phiAsp2 Qyrzula Rosebush	100 % 32 % 32 %
Tc1	protein:vir:106489 protein:vir:8667 protein:vir:99099	phiAsp2 Rosebush Qyrzula	100 % 25 % 24 %