Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PBI1 | Genbank acc : NC_008198 | Aclame index mge :1648

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 81

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	17	lcl\|Aclame:protein:vir:102186\|NCBI_annot:gp17\|genbank:acc:YP_655213;genbank:gi:109522793;genbank:Gen	HHsearch (proba=97.50%)
Portal	9	lcl\|Aclame:protein:vir:102239\|NCBI_annot:gp9\|genbank:acc:YP_655205;genbank:gi:109522785;genbank:Gene	HHsearch (proba=100.00%)
TermL	8	lcl\|Aclame:protein:vir:102238\|NCBI_annot:gp8\|genbank:acc:YP_655204;genbank:gi:109522784;genbank:Gene	Blast (e-value=0)
MTP	24	lcl\|Aclame:protein:vir:102193\|NCBI_annot:gp24\|genbank:acc:YP_655220;genbank:gi:109522800;genbank:Gen	Blast (e-value=1e-164)
Sheath	NOT FOUND
Ad1	19	lcl\|Aclame:protein:vir:102188\|NCBI_annot:gp19\|genbank:acc:YP_655215;genbank:gi:109522795;genbank:Gen	HHsearch (proba=100.00%)
Hc1	20	lcl\|Aclame:protein:vir:102189\|NCBI_annot:gp20\|genbank:acc:YP_655216;genbank:gi:109522796;genbank:Gen	HHsearch (proba=100.00%)
Ne1	21	lcl\|Aclame:protein:vir:102190\|NCBI_annot:gp21\|genbank:acc:YP_655217;genbank:gi:109522797;genbank:Gen	HHsearch (proba=100.00%)
Tc1	22	lcl\|Aclame:protein:vir:102191\|NCBI_annot:gp22\|genbank:acc:YP_655218;genbank:gi:109522798;genbank:Gen	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:101607 protein:vir:100632 protein:vir:8102	11b 77 Che9c	9 % 11 % 12 %
Portal	protein:vir:102239 protein:vir:101494 protein:vir:7430	PBI1 PLot Barnyard	100 % 99 % 36 %
TermL	protein:vir:102238 protein:vir:101493 protein:vir:7429	PBI1 PLot Barnyard	100 % 100 % 45 %
MTP	protein:vir:102193 protein:vir:101512 protein:vir:7453	PBI1 PLot Barnyard	100 % 100 % 52 %
Ad1	protein:vir:102188 protein:vir:101506 protein:vir:7446	PBI1 PLot Barnyard	100 % 100 % 35 %
Hc1	protein:vir:102189 protein:vir:101507 protein:vir:7447	PBI1 PLot Barnyard	100 % 100 % 36 %
Ne1	protein:vir:102190 protein:vir:101508 protein:vir:7449	PBI1 PLot Barnyard	100 % 100 % 47 %
Tc1	protein:vir:102191 protein:vir:101509 protein:vir:7450	PBI1 PLot Barnyard	100 % 99 % 36 %