Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Rosebush | Genbank acc : NC_004684 | Aclame index mge :156

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 4) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 90

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	21	lcl\|Aclame:protein:vir:8663\|NCBI_annot:gp21\|genbank:acc:NP_817782;genbank:gi:29566214;genbank:GeneID	HHsearch (proba=99.60%)
Portal	12	lcl\|Aclame:protein:vir:8654\|NCBI_annot:gp12\|genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID	HHsearch (proba=100.00%)
TermL	7	lcl\|Aclame:protein:vir:8649\|NCBI_annot:gp7\|genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID:	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	24	lcl\|Aclame:protein:vir:8666\|NCBI_annot:gp24\|genbank:acc:NP_817785;genbank:gi:29566217;genbank:GeneID	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	27	lcl\|Aclame:protein:vir:8669\|NCBI_annot:gp27\|genbank:acc:NP_817788;genbank:gi:29566220;genbank:GeneID	HHsearch (proba=100.00%)
Tc1	25	lcl\|Aclame:protein:vir:8667\|NCBI_annot:gp25\|genbank:acc:NP_817786;genbank:gi:29566218;genbank:GeneID	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:2344 protein:vir:78275 protein:vir:78506	Bxb1 Bethlehem U2	24 % 21 % 20 %
Portal	protein:vir:99088 protein:vir:8654 protein:vir:102426	Qyrzula Rosebush Pipefish	100 % 100 % 57 %
TermL	protein:vir:99083 protein:vir:8649 protein:vir:102402	Qyrzula Rosebush Pipefish	100 % 100 % 58 %
Ad1	protein:vir:99098 protein:vir:8666 protein:vir:106038	Qyrzula Rosebush Cooper	100 % 100 % 52 %
Ne1	protein:vir:99101 protein:vir:8669 protein:vir:102441	Qyrzula Rosebush Pipefish	100 % 100 % 56 %
Tc1	protein:vir:8667 protein:vir:99099 protein:vir:106039	Rosebush Qyrzula Cooper	100 % 98 % 48 %