Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Sfi19 | Genbank acc : NC_000871 | Aclame index mge :108

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 45

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|Aclame:protein:vir:4953\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	6	lcl\|Aclame:protein:vir:4952\|NCBI_annot:portal	HHsearch (proba=100.00%)
TermL	4	lcl\|Aclame:protein:vir:4950\|NCBI_annot:putative	Blast (e-value=0)
MTP	11	lcl\|Aclame:protein:vir:4957\|NCBI_annot:major	Blast (e-value=1e-118)
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:4954\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:4955\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:4956\|NCBI_annot:putative	HHsearch (proba=100.00%)
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4953 protein:vir:4830 protein:vir:4856	Sfi19 7201 DT1	100 % 94 % 93 %
Portal	protein:vir:4952 protein:vir:4854 protein:vir:4828	Sfi19 DT1 7201	100 % 85 % 82 %
TermL	protein:vir:4950 protein:vir:4852 protein:vir:4993	Sfi19 DT1 Sfi21	100 % 94 % 93 %
MTP	protein:vir:4957 protein:vir:4835 protein:vir:4861	Sfi19 7201 DT1	100 % 98 % 92 %
Ad1	protein:vir:4954 protein:vir:4857 protein:vir:4831	Sfi19 DT1 7201	100 % 91 % 90 %
Hc1	protein:vir:4955 protein:vir:4832 protein:vir:4858	Sfi19 7201 DT1	100 % 96 % 92 %
Ne1	protein:vir:4956 protein:vir:4833 protein:vir:4859	Sfi19 7201 DT1	100 % 94 % 91 %